Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 0.0e+00 1239.6 638 100.0
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 7.7e-259 897.1 660 71.5
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 4.9e-237 824.7 660 65.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 6.8e-231 804.3 660 65.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 5.4e-228 794.7 661 64.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.3e-223 779.2 650 63.8
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.6e-219 766.5 705 60.4
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.1e-217 760.4 662 61.3
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.2e-215 751.5 638 64.9
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.9e-212 743.0 660 61.7
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 8.7e-210 734.2 661 60.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 5.8e-206 721.5 664 60.5
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-205 719.9 666 59.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.1e-204 717.2 660 60.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.1e-203 713.0 655 60.8
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.0e-202 710.7 666 60.2
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.5e-201 706.8 720 53.9
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 3.3e-201 705.7 667 59.5
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 9.6e-201 704.1 670 57.5
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.6e-200 702.2 724 55.5
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 4.0e-199 698.7 709 55.7
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 7.6e-198 694.5 729 53.1
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 4.9e-197 691.8 704 54.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 4.2e-196 688.7 705 56.5
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.6e-195 686.8 705 53.9
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.0e-194 684.1 639 58.7
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 6.7e-194 681.4 714 53.4
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 4.3e-193 678.7 698 54.9
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 7.4e-193 677.9 714 53.2
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.8e-192 676.0 578 63.7
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-191 674.1 708 55.1
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.6e-190 669.5 705 53.2
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.4e-190 669.1 666 55.4
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.5e-190 668.7 671 56.2
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 5.8e-190 668.3 721 54.4
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 6.4e-189 664.8 712 53.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 8.4e-189 664.5 667 55.8
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.4e-188 663.7 714 53.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.2e-188 662.5 705 52.8
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 9.3e-188 661.0 684 54.8
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.1e-187 659.8 667 55.8
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 4.6e-187 658.7 761 51.2
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 6.7e-186 654.8 659 55.1
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.1e-185 654.1 703 53.9
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.7e-184 649.0 721 53.7
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.4e-183 647.1 717 52.4
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 9.0e-183 644.4 669 55.6
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.5e-182 643.7 666 54.1
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 4.5e-182 642.1 717 52.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.7e-181 640.2 671 54.5
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 4.9e-181 638.6 665 54.0
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 8.4e-181 637.9 714 51.8
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.9e-180 636.7 679 53.0
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.5e-180 636.3 660 55.9
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 9.3e-180 634.4 709 50.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.6e-179 633.6 661 56.1
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.8e-178 630.2 667 56.2
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-176 623.6 667 54.9
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.2e-176 623.2 718 51.7
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.7e-176 622.5 705 50.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.2e-176 621.3 751 48.3
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 6.9e-175 618.2 715 52.9
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.4e-172 610.5 759 47.8
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 3.6e-171 605.9 667 53.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.8e-170 603.6 799 45.9
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.0e-170 602.8 659 52.2
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.7e-168 595.9 735 48.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.4e-167 594.0 634 54.1
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.2e-166 590.9 707 48.9
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.0e-165 587.8 710 49.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-165 587.8 670 52.4
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.9e-164 583.6 730 47.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.6e-163 580.5 615 54.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.7e-163 579.7 631 53.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 3.6e-163 579.3 726 48.1
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.9e-156 557.0 722 46.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.2e-156 555.8 722 46.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 2.4e-151 540.0 727 45.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.6e-150 537.3 673 47.4
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.0e-150 537.0 706 45.2
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.2e-149 533.5 722 45.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.5e-148 530.8 724 43.8
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.5e-148 530.0 724 44.3
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.0e-146 523.1 661 48.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.2e-146 522.3 723 43.2
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 6.7e-146 521.9 613 51.7
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 3.1e-143 513.1 751 42.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 7.0e-143 511.9 654 46.9
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.7e-142 508.4 704 45.3
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.2e-139 501.1 770 42.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 6.1e-139 498.8 679 44.8
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.5e-137 494.2 658 44.8
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 6.3e-136 488.8 848 38.4
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.1e-135 486.1 616 47.7
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 7.5e-129 465.3 629 46.1
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.3e-125 454.5 460 55.4
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.4e-122 444.5 833 37.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 5.2e-122 442.6 832 36.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 6.8e-122 442.2 505 52.3
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 2.0e-121 440.7 802 38.0
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.8e-121 439.1 681 42.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.3e-120 438.0 810 38.1
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 4.7e-107 392.9 803 36.9
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.4e-106 391.3 720 39.9
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.2e-97 361.7 644 41.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-95 355.1 662 36.9
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 9.2e-95 352.1 350 56.0
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.5e-94 350.1 664 36.3
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.6e-91 340.1 659 36.0
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.4e-79 300.8 676 36.1
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.4e-72 276.2 325 48.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.2e-70 271.9 615 34.3
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 7.9e-70 269.2 713 29.7
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.6e-68 263.1 277 52.0
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 7.6e-65 252.7 637 31.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 5.5e-63 246.5 877 28.1
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 2.8e-59 234.2 202 58.4
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.2e-51 208.0 389 37.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 7.7e-49 199.5 134 81.3
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.0e-48 199.1 646 26.6
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-45 188.7 172 55.2
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.4e-45 188.7 172 55.2
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 8.8e-45 186.0 126 72.2
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.6e-41 174.5 295 34.9
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.2e-35 154.8 192 45.8
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.4e-28 131.0 103 64.1
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.0e-24 119.4 78 74.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.2e-20 105.9 90 57.8
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.3e-19 102.4 217 35.9
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-15 89.0 127 40.2
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 6.1e-14 83.6 113 39.8
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 6.6e-08 63.5 54 59.3
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.6e-07 60.5 172 33.7


User provided reference genes

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