Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 1.2e-47 193.4 142 100.0
Dinv04698 Davidia involucrata HOM05D007544 ORTHO05D009682 9.2e-11 70.9 92 66.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 9.2e-11 70.9 33 90.9
Dinv18713 Davidia involucrata HOM05D016106 ORTHO05D000140 4.5e-10 68.6 94 68.1
Dinv09230 Davidia involucrata HOM05D016106 ORTHO05D000140 7.8e-10 67.8 95 61.1
Dinv32100 Davidia involucrata HOM05D016106 ORTHO05D000140 7.8e-10 67.8 94 62.8
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 2.5e-08 62.8 30 83.3
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 3.3e-08 62.4 30 86.7
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 3.3e-08 62.4 30 86.7
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 3.3e-08 62.4 30 86.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 4.3e-08 62.0 28 92.9
Dinv01449 Davidia involucrata HOM05D016106 ORTHO05D000140 4.3e-08 62.0 100 81.0
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 4.3e-08 62.0 30 83.3
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 5.6e-08 61.6 28 89.3
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 5.6e-08 61.6 30 83.3
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 5.6e-08 61.6 30 83.3
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 9.5e-08 60.8 30 83.3
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 9.5e-08 60.8 30 80.0
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 9.5e-08 60.8 33 75.8
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 9.5e-08 60.8 30 80.0
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 9.5e-08 60.8 30 80.0
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 1.2e-07 60.5 30 80.0
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.2e-07 60.5 30 80.0
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.2e-07 60.5 28 89.3
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 1.2e-07 60.5 30 80.0
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.6e-07 60.1 28 89.3
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.6e-07 60.1 30 83.3
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.6e-07 60.1 30 80.0
Dinv30225 Davidia involucrata HOM05D016106 ORTHO05D000140 2.1e-07 59.7 99 80.8
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 2.1e-07 59.7 30 83.3
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 2.1e-07 59.7 30 83.3
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.8e-07 59.3 28 85.7
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.8e-07 59.3 30 86.7
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 2.8e-07 59.3 30 80.0
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 2.8e-07 59.3 30 80.0
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.6e-07 58.9 30 73.3
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.6e-07 58.9 30 80.0
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.6e-07 58.9 30 80.0
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.6e-07 58.9 30 80.0
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 4.7e-07 58.5 28 82.1
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 6.1e-07 58.2 30 73.3
Dinv02118 Davidia involucrata HOM05D016106 ORTHO05D000140 6.1e-07 58.2 29 89.7
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 6.1e-07 58.2 30 73.3
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 6.1e-07 58.2 31 77.4
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 6.1e-07 58.2 28 82.1
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 6.1e-07 58.2 28 85.7
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.0e-06 57.4 30 80.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.0e-06 57.4 30 80.0
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.0e-06 57.4 34 73.5
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.0e-06 57.4 30 80.0
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.4e-06 57.0 27 88.9
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.4e-06 57.0 28 78.6
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.4e-06 57.0 30 80.0
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 1.8e-06 56.6 28 85.7
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 2.3e-06 56.2 30 73.3
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.3e-06 56.2 28 85.7
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.3e-06 56.2 29 82.8
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 2.3e-06 56.2 30 76.7
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 3.0e-06 55.8 28 82.1
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 3.0e-06 55.8 28 82.1
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 3.0e-06 55.8 27 81.5
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 4.0e-06 55.5 56 48.2
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 5.2e-06 55.1 27 85.2
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 5.2e-06 55.1 30 76.7
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 5.2e-06 55.1 30 73.3
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 5.2e-06 55.1 28 82.1
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 5.2e-06 55.1 28 82.1
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 5.2e-06 55.1 28 82.1
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 6.8e-06 54.7 30 73.3
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 8.9e-06 54.3 30 76.7


User provided reference genes

Program Settings