Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 3.3e-111 405.2 232 100.0
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 6.8e-64 248.1 137 89.8
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 7.3e-58 228.0 121 90.9
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.1e-56 222.6 121 88.4
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.1e-56 222.6 121 88.4
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 6.9e-56 221.5 126 86.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-55 220.3 121 89.3
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.5e-55 220.3 121 89.3
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.5e-55 220.3 121 87.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.0e-55 219.9 121 89.3
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.6e-55 219.5 121 89.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.4e-55 218.8 121 88.4
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.4e-55 218.8 121 88.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.4e-55 218.8 121 89.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.4e-55 218.8 121 87.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 7.6e-55 218.0 121 90.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 7.6e-55 218.0 121 86.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.7e-54 216.9 121 86.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.7e-54 216.9 121 86.8
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.2e-54 216.5 121 86.8
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.2e-54 216.5 121 89.3
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.2e-54 216.5 121 86.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.9e-54 215.3 126 84.9
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 4.9e-54 215.3 121 85.1
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.9e-54 215.3 121 86.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 6.4e-54 214.9 121 87.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.4e-54 214.9 121 88.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.4e-54 214.5 121 87.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.4e-54 214.5 121 86.0
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.1e-53 214.2 121 86.0
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.1e-53 214.2 121 84.3
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.9e-53 213.4 119 85.7
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.4e-53 213.0 121 86.8
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 3.2e-53 212.6 121 84.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.2e-53 212.6 121 86.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 4.2e-53 212.2 121 87.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 4.2e-53 212.2 121 86.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 5.4e-53 211.8 119 89.1
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-53 211.8 121 87.6
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.4e-53 211.8 119 87.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 5.4e-53 211.8 121 84.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 7.1e-53 211.5 119 88.2
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 9.3e-53 211.1 121 84.3
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 9.3e-53 211.1 121 83.5
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.2e-52 210.7 121 84.3
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-52 210.7 121 86.0
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.2e-52 210.7 121 82.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.6e-52 210.3 121 85.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-52 210.3 119 86.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.7e-52 209.5 119 87.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.5e-52 209.1 121 83.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 4.6e-52 208.8 121 82.6
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.0e-52 208.4 121 81.8
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-52 208.4 121 82.6
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 6.0e-52 208.4 121 83.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.0e-52 208.4 121 82.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 6.0e-52 208.4 121 83.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.0e-51 207.6 120 85.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.3e-51 207.2 126 81.7
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.0e-51 206.1 121 81.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.9e-51 205.7 121 81.8
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.9e-51 205.7 121 82.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 5.1e-51 205.3 121 81.8
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 5.1e-51 205.3 121 83.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 6.6e-51 204.9 120 82.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 8.7e-51 204.5 119 82.4
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-50 204.1 121 81.8
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.1e-50 204.1 121 80.2
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.1e-50 204.1 120 83.3
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-50 203.8 122 82.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.5e-50 203.0 118 80.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.5e-50 203.0 121 80.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.5e-50 203.0 121 81.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.3e-50 202.6 119 83.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.3e-50 202.6 121 80.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.3e-50 202.6 121 77.7
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.3e-50 202.6 121 78.5
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.3e-50 202.6 116 84.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 4.3e-50 202.2 118 80.5
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.3e-50 202.2 118 80.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 4.3e-50 202.2 118 80.5
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 4.3e-50 202.2 118 80.5
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 5.6e-50 201.8 118 80.5
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 7.3e-50 201.4 120 82.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 9.6e-50 201.1 126 74.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.6e-50 201.1 118 79.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 9.6e-50 201.1 119 79.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 9.6e-50 201.1 110 88.2
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.3e-49 200.7 118 79.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-49 200.7 118 78.8
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.6e-49 200.3 118 78.0
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.1e-49 199.9 119 81.5
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.1e-49 199.9 126 74.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.8e-49 199.5 121 76.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.6e-49 199.1 118 78.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.6e-49 199.1 119 80.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 8.1e-49 198.0 118 78.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.1e-48 197.6 121 77.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-48 197.6 118 78.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-48 197.2 118 78.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.4e-48 197.2 118 78.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-47 193.7 118 77.1
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.5e-47 192.2 119 79.8
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 5.8e-47 191.8 127 72.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 7.6e-47 191.4 119 80.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-46 190.7 115 79.1
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-46 190.7 115 80.0
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-46 189.5 115 79.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.4e-46 188.3 126 71.4
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 7.1e-45 184.9 102 89.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.3e-45 184.5 115 78.3
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.3e-45 184.5 115 78.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-44 183.7 115 76.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 6.0e-44 181.8 122 71.3
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.9e-44 181.4 118 72.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.1e-43 178.7 121 73.6
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.7e-43 178.3 119 73.1
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.7e-43 178.3 119 72.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 4.3e-42 175.6 116 73.3
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 3.7e-41 172.6 119 68.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.7e-41 172.6 119 68.9
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.8e-41 172.2 111 73.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.2e-41 171.8 111 72.1
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.2e-41 171.8 119 68.9
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.1e-41 171.4 109 76.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-40 170.2 119 68.9
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.1e-40 169.5 119 68.1
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.1e-40 169.5 119 68.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 4.0e-40 169.1 111 71.2
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 4.0e-40 169.1 116 69.8
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.3e-40 168.7 121 69.4
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.9e-40 168.3 108 72.2
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 6.9e-40 168.3 117 70.1
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 9.0e-40 167.9 117 68.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-39 166.8 119 66.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.4e-39 166.0 116 69.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 4.5e-39 165.6 118 69.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.3e-38 164.1 116 69.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.9e-38 162.9 118 66.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.1e-36 156.8 118 63.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.9e-36 154.8 113 71.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-35 154.1 112 70.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.8e-35 153.7 92 77.2
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.8e-33 145.6 99 74.7
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.4e-32 144.1 118 58.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.4e-31 139.4 80 86.2
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.5e-31 139.0 91 75.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.4e-29 134.0 121 62.8
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.4e-29 134.0 82 79.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.2e-23 114.4 112 58.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 8.5e-22 108.2 88 63.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 7.2e-21 105.1 90 60.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.6e-20 104.0 79 65.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-20 103.6 59 86.4
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.6e-20 102.8 88 60.2
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.9e-18 97.1 52 92.3
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 8.2e-17 91.7 59 81.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.5e-14 82.0 50 82.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-13 78.6 60 61.7
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.6e-12 77.4 46 78.3
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.0e-10 70.5 38 86.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 3.7e-09 66.2 36 86.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 6.3e-09 65.5 54 59.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 5.3e-08 62.4 49 59.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-07 60.8 33 75.8
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.6e-07 60.1 33 75.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 3.4e-07 59.7 119 35.3
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.9e-07 58.9 75 42.7
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.7e-06 57.4 91 36.3


User provided reference genes

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