Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20837 Davidia involucrata HOM05D001816 ORTHO05D029214 2.2e-64 248.8 127 100.0
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 6.5e-16 87.8 104 49.0
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 6.5e-16 87.8 106 47.2
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 6.5e-16 87.8 104 48.1
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.4e-15 86.7 106 46.2
Dinv20831 Davidia involucrata HOM05D033030 ORTHO05D029214 1.4e-15 86.7 54 79.6
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 4.2e-15 85.1 104 46.2
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 4.2e-15 85.1 104 47.1
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 7.2e-15 84.3 104 44.2
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.2e-14 83.6 104 44.2
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.7e-14 82.4 104 48.1
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.7e-14 82.4 104 48.1
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.7e-14 82.4 104 44.2
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.6e-14 82.0 104 47.1
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 4.6e-14 81.6 104 48.1
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 4.6e-14 81.6 104 42.3
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.6e-14 81.6 104 46.2
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 6.1e-14 81.3 104 44.2
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 6.1e-14 81.3 104 45.2
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 7.9e-14 80.9 103 45.6
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 7.9e-14 80.9 106 44.3
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.0e-13 80.5 100 44.0
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.0e-13 80.5 109 42.2
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.0e-13 80.5 115 40.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 1.4e-13 80.1 103 45.6
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.4e-13 80.1 106 40.6
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.4e-13 80.1 103 46.6
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.4e-13 80.1 106 44.3
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 1.8e-13 79.7 103 42.7
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.8e-13 79.7 101 43.6
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.8e-13 79.7 103 46.6
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.8e-13 79.7 103 46.6
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.8e-13 79.7 103 46.6
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 2.3e-13 79.3 104 44.2
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.3e-13 79.3 104 45.2
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 3.0e-13 79.0 104 44.2
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.9e-13 78.6 104 46.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.9e-13 78.6 101 42.6
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.9e-13 78.6 101 42.6
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 3.9e-13 78.6 104 42.3
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 5.1e-13 78.2 104 41.3
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.1e-13 78.2 101 42.6
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 5.1e-13 78.2 104 42.3
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 5.1e-13 78.2 103 44.7
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 6.7e-13 77.8 104 44.2
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 6.7e-13 77.8 103 40.8
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-12 77.0 103 40.8
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.1e-12 77.0 104 44.2
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 1.5e-12 76.6 103 44.7
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 1.5e-12 76.6 100 43.0
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.9e-12 76.3 106 41.5
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 1.9e-12 76.3 96 44.8
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.9e-12 76.3 104 41.3
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 1.9e-12 76.3 104 42.3
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.9e-12 76.3 103 39.8
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 2.5e-12 75.9 100 44.0
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.5e-12 75.9 103 39.8
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.3e-12 75.5 104 40.4
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 3.3e-12 75.5 103 39.8
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 3.3e-12 75.5 96 41.7
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 3.3e-12 75.5 103 39.8
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.3e-12 75.5 104 39.4
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 3.3e-12 75.5 104 39.4
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 3.3e-12 75.5 103 41.7
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 3.3e-12 75.5 104 44.2
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.3e-12 75.1 101 43.6
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.3e-12 75.1 101 43.6
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 4.3e-12 75.1 103 39.8
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 4.3e-12 75.1 103 39.8
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 4.3e-12 75.1 104 43.3
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.3e-12 75.1 104 43.3
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 4.3e-12 75.1 104 43.3
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.3e-12 75.1 104 44.2
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 4.3e-12 75.1 106 39.6
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 4.3e-12 75.1 106 42.5
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 4.3e-12 75.1 103 41.7
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.3e-12 75.1 104 43.3
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.7e-12 74.7 104 40.4
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 5.7e-12 74.7 101 41.6
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 7.4e-12 74.3 103 39.8
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 7.4e-12 74.3 104 42.3
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 7.4e-12 74.3 103 44.7
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 7.4e-12 74.3 104 43.3
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 7.4e-12 74.3 104 40.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 7.4e-12 74.3 102 40.2
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 9.7e-12 73.9 103 38.8
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 9.7e-12 73.9 103 38.8
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 9.7e-12 73.9 103 38.8
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 9.7e-12 73.9 103 38.8
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 9.7e-12 73.9 103 38.8
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.3e-11 73.6 104 42.3
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 1.7e-11 73.2 103 38.8
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 1.7e-11 73.2 103 38.8
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.7e-11 73.2 100 42.0
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 1.7e-11 73.2 104 43.3
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 2.2e-11 72.8 104 42.3
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 2.8e-11 72.4 103 42.7
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 2.8e-11 72.4 103 38.8
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 2.8e-11 72.4 103 38.8
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 2.8e-11 72.4 103 38.8
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 2.8e-11 72.4 103 38.8
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 3.7e-11 72.0 103 38.8
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 3.7e-11 72.0 103 39.8
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 3.7e-11 72.0 100 41.0
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 3.7e-11 72.0 105 41.9
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 4.8e-11 71.6 102 43.1
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 4.8e-11 71.6 106 38.7
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 6.3e-11 71.2 103 38.8
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 6.3e-11 71.2 104 40.4
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 8.2e-11 70.9 103 40.8
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.1e-10 70.5 103 37.9
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 1.4e-10 70.1 104 40.4
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 1.8e-10 69.7 101 39.6
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.8e-10 69.7 99 45.5
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.8e-10 69.7 106 39.6
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 4.1e-10 68.6 100 44.0
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 4.1e-10 68.6 104 39.4
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 5.3e-10 68.2 123 37.4
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.3e-10 68.2 104 38.5
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 6.9e-10 67.8 104 38.5
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 9.1e-10 67.4 100 43.0
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 9.1e-10 67.4 104 38.5
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.2e-09 67.0 51 64.7
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.2e-09 67.0 100 42.0
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 1.5e-09 66.6 100 40.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 2.0e-09 66.2 99 40.4
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 2.6e-09 65.9 104 41.3
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 2.6e-09 65.9 104 38.5
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 3.4e-09 65.5 104 36.5
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 7.7e-09 64.3 103 38.8
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.0e-08 63.9 100 40.0
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.9e-08 62.4 77 46.8
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.8e-08 62.0 102 35.3
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 6.5e-08 61.2 104 37.5
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.6e-06 56.6 106 33.0
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 3.6e-06 55.5 106 32.1
Potri.007G070250 Populus trichocarpa HOM05D001816 ORTHO05D002001 3.6e-06 55.5 52 59.6


User provided reference genes

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