Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20831 Davidia involucrata HOM05D033030 ORTHO05D029214 2.5e-71 271.9 132 100.0
Dinv20836 Davidia involucrata HOM05D033030 ORTHO05D029214 6.5e-19 97.8 56 91.1
Dinv20828 Davidia involucrata HOM05D033030 ORTHO05D029214 2.7e-17 92.4 48 93.8
Dinv20837 Davidia involucrata HOM05D001816 ORTHO05D029214 3.9e-16 88.6 54 79.6
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.8e-13 79.7 244 30.7
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 4.1e-13 78.6 49 71.4
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 7.0e-13 77.8 51 72.5
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 1.2e-12 77.0 49 77.6
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.6e-12 76.6 49 73.5
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 3.5e-12 75.5 49 69.4
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 3.5e-12 75.5 51 68.6
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 3.5e-12 75.5 49 71.4
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 4.5e-12 75.1 49 73.5
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 5.9e-12 74.7 49 71.4
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 7.7e-12 74.3 54 61.1
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 7.7e-12 74.3 49 71.4
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.0e-11 73.9 49 69.4
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.0e-11 73.9 49 73.5
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.0e-11 73.9 49 73.5
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.0e-11 73.9 49 75.5
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 1.3e-11 73.6 53 60.4
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.3e-11 73.6 49 71.4
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.7e-11 73.2 49 67.3
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.7e-11 73.2 48 70.8
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.2e-11 72.8 49 67.3
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 2.2e-11 72.8 49 69.4
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 2.2e-11 72.8 49 67.3
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.9e-11 72.4 49 71.4
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.9e-11 72.4 48 72.9
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 2.9e-11 72.4 49 69.4
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.8e-11 72.0 49 69.4
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 5.0e-11 71.6 49 71.4
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.0e-11 71.6 49 65.3
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 5.0e-11 71.6 49 65.3
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 69.4
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 69.4
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 69.4
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 67.3
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 69.4
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 6.5e-11 71.2 48 70.8
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 6.5e-11 71.2 51 62.7
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 6.5e-11 71.2 49 63.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 6.5e-11 71.2 51 64.7
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 8.5e-11 70.9 48 64.6
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 8.5e-11 70.9 48 64.6
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 8.5e-11 70.9 48 68.8
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 8.5e-11 70.9 49 69.4
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 8.5e-11 70.9 48 70.8
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 8.5e-11 70.9 49 69.4
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 8.5e-11 70.9 49 67.3
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.1e-10 70.5 51 58.8
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 1.1e-10 70.5 46 71.7
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.1e-10 70.5 48 70.8
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.1e-10 70.5 48 70.8
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.5e-10 70.1 49 65.3
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.5e-10 70.1 122 36.1
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-10 69.7 49 65.3
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 1.9e-10 69.7 45 71.1
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 2.5e-10 69.3 49 63.3
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 2.5e-10 69.3 49 61.2
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.5e-10 69.3 49 65.3
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.5e-10 69.3 48 68.8
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.2e-10 68.9 48 62.5
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.2e-10 68.9 48 62.5
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 3.2e-10 68.9 49 67.3
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 3.2e-10 68.9 119 36.1
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 3.2e-10 68.9 49 67.3
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 3.2e-10 68.9 49 61.2
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 66.7
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 62.5
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 62.5
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 4.2e-10 68.6 49 65.3
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 60.4
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 60.4
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 4.2e-10 68.6 45 73.3
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 4.2e-10 68.6 48 62.5
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 5.5e-10 68.2 48 62.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.5e-10 68.2 48 60.4
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 5.5e-10 68.2 45 64.4
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 5.5e-10 68.2 48 62.5
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 7.2e-10 67.8 48 64.6
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 7.2e-10 67.8 49 63.3
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 9.4e-10 67.4 46 65.2
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 9.4e-10 67.4 51 60.8
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.2e-09 67.0 49 65.3
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.2e-09 67.0 49 59.2
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.6e-09 66.6 48 58.3
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 1.6e-09 66.6 42 71.4
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 1.6e-09 66.6 42 71.4
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 2.1e-09 66.2 47 59.6
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.1e-09 66.2 48 58.3
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.7e-09 65.9 48 62.5
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.7e-09 65.9 49 63.3
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 3.6e-09 65.5 48 58.3
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.6e-09 65.5 48 58.3
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 4.7e-09 65.1 49 61.2
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 4.7e-09 65.1 46 69.6
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 4.7e-09 65.1 42 69.0
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 4.7e-09 65.1 50 64.0
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 6.1e-09 64.7 48 62.5
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 6.1e-09 64.7 48 58.3
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 6.1e-09 64.7 48 58.3
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 6.1e-09 64.7 45 66.7
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 6.1e-09 64.7 45 66.7
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 8.0e-09 64.3 48 58.3
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 8.0e-09 64.3 48 58.3
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 8.0e-09 64.3 48 60.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 8.0e-09 64.3 45 64.4
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.0e-08 63.9 57 56.1
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.0e-08 63.9 44 65.9
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 1.0e-08 63.9 68 54.4
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.4e-08 63.5 45 62.2
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.4e-08 63.5 45 62.2
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 1.4e-08 63.5 48 58.3
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 1.4e-08 63.5 41 65.9
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.4e-08 63.5 49 57.1
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.4e-08 63.5 48 56.2
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.4e-08 63.5 45 64.4
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.8e-08 63.2 48 58.3
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.8e-08 63.2 48 62.5
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 2.3e-08 62.8 48 58.3
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 2.3e-08 62.8 49 57.1
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 4.0e-08 62.0 45 64.4
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 6.7e-08 61.2 46 58.7
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.6e-07 59.3 54 53.7
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 3.3e-07 58.9 48 62.5
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 4.4e-07 58.5 51 58.8
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.7e-07 58.2 48 56.2
Cpa.g.c38643 Carica papaya HOM05D001816 ORTHO05D026252 1.3e-06 57.0 37 73.0
Potri.007G070250 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.2e-06 56.2 49 65.3
Atru.chr2.1588 Acer truncatum HOM05D001816 ORTHO05D026252 8.2e-06 54.3 38 63.2
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 8.2e-06 54.3 64 45.3


User provided reference genes

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