Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17311 Davidia involucrata HOM05D002702 ORTHO05D003416 9.0e-138 493.8 292 100.0
Dinv17316 Davidia involucrata HOM05D002702 ORTHO05D003416 5.2e-93 345.1 242 90.5
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 3.2e-42 176.4 214 57.5
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 7.8e-41 171.8 275 50.5
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.0e-40 171.4 274 48.2
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.2e-36 157.9 254 49.2
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 1.4e-34 151.0 188 58.0
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.2e-34 149.4 150 60.0
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 4.2e-34 149.4 157 57.3
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.6e-33 147.5 157 56.1
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 2.7e-33 146.7 146 67.1
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 3.5e-33 146.4 197 51.3
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 4.6e-33 146.0 229 46.7
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.0e-32 144.8 216 47.2
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 1.3e-32 144.4 150 66.0
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 2.3e-32 143.7 270 42.6
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 3.9e-32 142.9 195 49.2
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 6.7e-32 142.1 218 44.5
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 6.7e-32 142.1 218 44.5
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 6.7e-32 142.1 164 54.3
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 8.7e-32 141.7 260 47.7
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 4.3e-31 139.4 266 38.3
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.3e-31 139.4 311 36.3
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 4.3e-31 139.4 152 58.6
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 5.6e-31 139.0 266 38.7
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 9.6e-31 138.3 138 60.9
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 1.6e-30 137.5 237 44.3
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 1.6e-30 137.5 155 54.2
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 8.1e-30 135.2 217 49.8
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 8.1e-30 135.2 233 42.1
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 8.1e-30 135.2 273 40.7
vmacro20470 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 8.1e-30 135.2 217 45.2
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 1.1e-29 134.8 155 58.7
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.1e-29 134.8 148 55.4
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 2.4e-29 133.7 277 45.5
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 3.1e-29 133.3 230 40.0
QL05p040842 Quercus lobata HOM05D002702 ORTHO05D003416 5.3e-29 132.5 199 49.2
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 6.9e-29 132.1 188 55.3
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 9.0e-29 131.7 218 50.0
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 2.0e-28 130.6 321 40.8
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 2.0e-28 130.6 234 39.7
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 4.5e-28 129.4 162 53.7
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 5.8e-28 129.0 252 47.2
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 1.7e-27 127.5 206 51.5
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 2.9e-27 126.7 215 48.8
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 3.8e-27 126.3 157 58.6
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 3.8e-27 126.3 207 42.5
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 3.8e-27 126.3 199 53.3
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 1.1e-26 124.8 220 40.5
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.4e-26 124.4 154 50.6
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 2.4e-26 123.6 183 47.0
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 2.4e-26 123.6 284 35.9
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 9.3e-26 121.7 176 52.8
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 1.2e-25 121.3 211 42.7
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 1.6e-25 120.9 134 56.7
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.5e-25 119.8 210 41.4
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.5e-25 119.8 210 41.4
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 7.9e-25 118.6 152 49.3
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 2.3e-24 117.1 202 39.1
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 2.3e-24 117.1 148 50.7
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 3.9e-24 116.3 238 43.7
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 5.1e-24 115.9 214 42.1
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 1.9e-23 114.0 147 50.3
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 7.4e-23 112.1 226 36.3
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 7.4e-23 112.1 231 40.7
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 1.6e-22 110.9 213 53.5
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 2.1e-22 110.5 199 41.2
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 2.1e-22 110.5 142 47.2
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 2.1e-22 110.5 152 48.0
Actinidia39727 Actinidia chinensis HOM05D002702 ORTHO05D019466 6.2e-22 109.0 200 44.0
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 6.2e-22 109.0 229 40.2
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 6.2e-22 109.0 177 43.5
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 1.1e-21 108.2 200 43.5
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 1.1e-21 108.2 212 39.6
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 1.4e-21 107.8 116 56.9
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 1.4e-21 107.8 195 42.1
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.4e-21 107.8 202 41.6
Psat3g086200 Pisum sativum HOM05D002702 ORTHO05D003416 1.8e-21 107.5 136 50.0
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 1.2e-20 104.8 136 47.8
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 1.2e-20 104.8 136 47.8
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 1.2e-20 104.8 136 47.8
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 1.2e-20 104.8 136 47.8
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 2.0e-20 104.0 154 43.5
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 2.0e-20 104.0 208 38.0
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 4.5e-20 102.8 227 36.6
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 4.5e-20 102.8 210 35.2
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 7.6e-20 102.1 141 46.8
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 1.0e-19 101.7 134 52.2
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.3e-19 101.3 206 36.4
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.3e-19 101.3 143 44.8
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.3e-19 101.3 242 35.1
Haze_20120 Corylus avellana HOM05D002702 ORTHO05D003416 1.7e-19 100.9 153 54.9
Nitab4.5_0015985g0010 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.7e-19 100.9 167 44.3
Sed0020965 Sechium edule HOM05D002702 ORTHO05D010786 1.7e-19 100.9 225 36.4
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 3.8e-19 99.8 149 45.6
Lj4g0025158 Lotus japonicus HOM05D002702 ORTHO05D003416 6.5e-19 99.0 136 43.4
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 6.5e-19 99.0 230 36.1
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 1.1e-18 98.2 147 44.9
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 1.1e-18 98.2 235 39.6
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 1.1e-18 98.2 135 54.8
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 1.4e-18 97.8 145 44.1
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 2.5e-18 97.1 136 45.6
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 5.5e-18 95.9 126 47.6
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 7.1e-18 95.5 138 44.9
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 9.3e-18 95.1 155 46.5
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 9.3e-18 95.1 210 37.1
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 2.7e-17 93.6 114 49.1
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 6.0e-17 92.4 226 35.0
ECA233G5179 Erigeron canadensis HOM05D002702 ORTHO05D003416 6.0e-17 92.4 194 36.1
Psat3g086160 Pisum sativum HOM05D002702 ORTHO05D015070 6.0e-17 92.4 214 35.5
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 7.9e-17 92.0 202 37.1
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 7.9e-17 92.0 207 36.7
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 1.3e-16 91.3 264 32.2
Lalb_Chr02g0157421 Lupinus albus HOM05D002702 ORTHO05D003416 1.3e-16 91.3 138 43.5
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 2.3e-16 90.5 210 37.1
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 2.3e-16 90.5 141 51.8
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.0e-16 90.1 131 44.3
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 6.7e-16 89.0 135 44.4
DCAR_028213 Daucus carota HOM05D002702 ORTHO05D003416 6.7e-16 89.0 123 47.2
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 8.7e-16 88.6 209 35.4
VMungo1383G3011 Vigna mungo HOM05D002702 ORTHO05D003416 1.5e-15 87.8 145 44.1
ClCG11G015790 Citrullus lanatus HOM05D002702 ORTHO05D010786 1.9e-15 87.4 167 36.5
Zm00001eb294450 Zea mays HOM05D002702 ORTHO05D003416 2.5e-15 87.0 136 44.1
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 2.5e-15 87.0 181 36.5
Phvul.001G106000 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 3.3e-15 86.7 146 43.8
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 4.3e-15 86.3 111 46.8
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 4.3e-15 86.3 125 45.6
vmacro18115 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 1.6e-14 84.3 247 33.2
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 2.1e-14 84.0 257 31.9
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 2.8e-14 83.6 170 38.8
Zm00001eb304800 Zea mays HOM05D002702 ORTHO05D003416 2.8e-14 83.6 115 46.1
CsaV3_4G028190 Cucumis sativus L. HOM05D002702 ORTHO05D010786 3.7e-14 83.2 169 34.9
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 6.3e-14 82.4 157 45.9
HPP92_016841 Vanilla planifolia HOM05D002702 ORTHO05D015070 6.3e-14 82.4 165 38.8
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 1.1e-13 81.6 138 47.8
VMungo1383G3234 Vigna mungo HOM05D002702 ORTHO05D003416 1.8e-13 80.9 140 43.6
Zm00001eb087600 Zea mays HOM05D000276 ORTHO05D003855 1.8e-13 80.9 112 46.4
DCAR_015631 Daucus carota HOM05D002702 ORTHO05D003416 2.4e-13 80.5 169 33.7
MELO3C032627.2 Cucumis melo HOM05D002702 ORTHO05D010786 3.1e-13 80.1 220 32.3
Oeu057252.1 Olea europaea HOM05D002702 ORTHO05D003416 3.1e-13 80.1 112 63.4
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 6.9e-13 79.0 149 39.6
SHI21361 Sapria himalayana HOM05D002702 ORTHO05D003416 1.2e-12 78.2 138 41.3
EL10Ac3g05292 Beta vulgaris HOM05D022334 ORTHO05D019466 7.6e-12 75.5 146 39.0
Hund20999 Selenicereus undatus HOM05D022334 ORTHO05D019466 1.7e-11 74.3 162 38.3
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 2.2e-11 73.9 129 41.1
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 2.9e-11 73.6 129 41.1
Zm00001eb077940 Zea mays HOM05D003030 ORTHO05D015070 2.9e-11 73.6 49 73.5
QL05p040799 Quercus lobata HOM05D002702 ORTHO05D003416 8.5e-11 72.0 178 37.6
Mapoly0001s0017 Marchantia polymorpha HOM05D002702 ORTHO05D003416 3.2e-10 70.1 239 36.8
SEGI_32455 Sequoiadendron giganteum HOM05D002702 ORTHO05D015070 4.2e-10 69.7 62 61.3
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 9.3e-10 68.6 182 35.7
Ca_08320_v3 Cicer arietinum L. HOM05D002702 ORTHO05D015070 1.2e-09 68.2 152 42.8
BcaB02g08778 Brassica carinata HOM05D002702 ORTHO05D003416 3.6e-09 66.6 131 38.2
Nitab4.5_0000406g0150 Nicotiana tabacum HOM05D011191 ORTHO05D010786 7.9e-09 65.5 179 33.0
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 7.9e-09 65.5 126 34.1
MCO16G125 Micromonas commoda HOM05D002702 ORTHO05D003416 1.0e-08 65.1 144 40.3
TPR.G9529 Trifolium pratense HOM05D002702 ORTHO05D003416 1.3e-08 64.7 122 43.4
CDE02G4627 Ceratophyllum demersum HOM05D002702 ORTHO05D010786 3.0e-08 63.5 143 34.3
Sc13g0009820 Simmondsia chinensis HOM05D002702 ORTHO05D019466 3.0e-08 63.5 152 37.5
CAN.G388.55 Capsicum annuum HOM05D002702 ORTHO05D003416 3.9e-08 63.2 120 45.0
Peaxi162Scf00793g00323 Petunia axillaris HOM05D002702 ORTHO05D003416 3.9e-08 63.2 213 28.2
CARHR248300 Cardamine hirsuta HOM05D002702 ORTHO05D003416 5.1e-08 62.8 154 35.7
Nitab4.5_0012106g0010 Nicotiana tabacum HOM05D011191 ORTHO05D010786 5.1e-08 62.8 181 31.5
FAN16G2119 Fragaria x ananassa HOM05D014033 ORTHO05D010786 6.7e-08 62.4 130 33.8
Peaxi162Scf01419g00119 Petunia axillaris HOM05D011191 ORTHO05D010786 6.7e-08 62.4 147 34.0
Rhsim07G0091200 Rhododendron simsii HOM05D011191 ORTHO05D010786 6.7e-08 62.4 143 37.1
FAN10G1124 Fragaria x ananassa HOM05D002702 ORTHO05D035272 1.1e-07 61.6 48 64.6
FvH4_3g11660 Fragaria vesca HOM05D014033 ORTHO05D010786 1.9e-07 60.8 136 33.8
SEGI_11244 Sequoiadendron giganteum HOM05D002702 ORTHO05D003416 2.5e-07 60.5 46 67.4
Atru.chr2.1533 Acer truncatum HOM05D002702 ORTHO05D003416 3.3e-07 60.1 129 38.8
C04p09810 Brassica napus HOM05D002702 ORTHO05D003416 3.3e-07 60.1 124 37.9
BolC4t22589H Brassica oleracea HOM05D002702 ORTHO05D003416 3.3e-07 60.1 124 37.9
FAN21G1527 Fragaria x ananassa HOM05D014033 ORTHO05D010786 4.3e-07 59.7 130 32.3
TPR.G35742 Trifolium pratense HOM05D002702 ORTHO05D015070 7.4e-07 58.9 47 63.8
MSTRG.11791 Avicennia marina HOM05D011191 ORTHO05D010786 1.3e-06 58.2 151 30.5
AUR62019394 Chenopodium quinoa HOM05D022334 ORTHO05D019466 1.3e-06 58.2 242 30.2
Oeu064523.1 Olea europaea HOM05D011191 ORTHO05D010786 1.3e-06 58.2 149 30.9
Sopen08g022570 Solanum pennellii HOM05D011191 ORTHO05D010786 1.3e-06 58.2 176 31.2
CSS0046413 Camellia sinensis var. sinensis HOM05D049805 ORTHO05D043320 2.2e-06 57.4 121 34.7
FAN06G1703 Fragaria x ananassa HOM05D002702 ORTHO05D035272 2.2e-06 57.4 164 32.9
Lalb_Chr14g0370781 Lupinus albus HOM05D002702 ORTHO05D003416 2.8e-06 57.0 101 36.6
VMungo1383G1677 Vigna mungo HOM05D002702 ORTHO05D015070 2.8e-06 57.0 81 45.7
FAN18G3773 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.7e-06 56.6 115 36.5
Potri.001G082800 Populus trichocarpa HOM05D011191 ORTHO05D010786 4.8e-06 56.2 151 30.5
TPR.G16468 Trifolium pratense HOM05D002702 ORTHO05D015070 4.8e-06 56.2 136 33.1
CSS0002052 Camellia sinensis var. sinensis HOM05D049805 ORTHO05D043320 6.3e-06 55.8 98 34.7
Sp1g06510 Schrenkiella parvula HOM05D002702 ORTHO05D003416 6.3e-06 55.8 148 35.1
Thhalv10027195m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 8.2e-06 55.5 60 51.7


User provided reference genes

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