Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.7e-74 283.1 202 100.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.2e-61 240.4 181 83.4
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 9.2e-57 224.2 177 79.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.7e-55 219.9 211 77.7
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.7e-55 219.9 184 80.4
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 3.0e-55 219.2 151 78.1
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.9e-55 218.8 172 77.3
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 5.1e-55 218.4 152 82.2
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 6.6e-55 218.0 152 82.2
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 6.6e-55 218.0 152 82.2
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 3.3e-54 215.7 170 81.2
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 9.5e-54 214.2 180 83.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.8e-53 212.6 184 79.3
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.7e-53 211.8 148 84.5
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.7e-53 211.8 169 72.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.4e-52 210.3 185 73.0
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.3e-52 209.5 191 72.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 4.0e-52 208.8 182 74.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.2e-52 208.4 183 81.4
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.2e-51 207.2 142 79.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.0e-51 206.5 172 80.8
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 2.0e-51 206.5 183 71.6
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 2.0e-51 206.5 151 79.5
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.6e-51 206.1 152 78.9
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.6e-51 206.1 176 76.7
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 5.8e-51 204.9 182 74.2
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 5.8e-51 204.9 176 80.7
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 5.8e-51 204.9 153 81.0
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 5.8e-51 204.9 179 70.9
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 7.6e-51 204.5 188 74.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 9.9e-51 204.1 131 87.8
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 9.9e-51 204.1 131 87.8
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 9.9e-51 204.1 179 79.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 9.9e-51 204.1 180 79.4
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.7e-50 203.4 107 88.8
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.2e-50 203.0 148 83.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.9e-50 202.6 151 82.1
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.9e-50 202.6 151 82.1
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.9e-50 202.6 181 71.8
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 181 80.7
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.4e-50 201.4 150 82.0
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.3e-50 201.1 173 81.5
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.3e-50 201.1 138 80.4
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 8.3e-50 201.1 181 77.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 8.3e-50 201.1 148 81.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-49 200.7 191 67.0
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-49 200.7 165 70.3
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.1e-49 200.7 183 79.2
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 148 83.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.4e-49 200.3 184 79.9
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.9e-49 199.9 151 77.5
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.4e-49 199.5 203 72.4
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.2e-49 199.1 207 67.1
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.2e-49 199.1 157 73.9
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 3.2e-49 199.1 173 80.3
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 3.2e-49 199.1 144 72.2
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.2e-49 199.1 183 78.1
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 4.1e-49 198.7 191 69.1
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 5.4e-49 198.4 173 71.7
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.4e-49 198.4 173 73.4
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.4e-49 198.4 173 73.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 5.4e-49 198.4 150 76.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.4e-49 198.4 106 88.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 9.2e-49 197.6 184 72.3
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 9.2e-49 197.6 175 81.7
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.2e-48 197.2 180 76.1
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.2e-48 197.2 146 81.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.2e-48 197.2 146 83.6
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.6e-48 196.8 181 79.0
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.1e-48 196.4 154 77.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.1e-48 196.4 189 73.5
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.1e-48 196.4 150 82.7
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.1e-48 196.4 164 70.7
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.7e-48 196.1 173 72.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.7e-48 196.1 179 79.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.7e-48 196.1 172 80.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 2.7e-48 196.1 157 78.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 3.5e-48 195.7 156 75.0
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 3.5e-48 195.7 156 75.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 3.5e-48 195.7 156 75.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.5e-48 195.7 178 79.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.5e-48 195.7 178 79.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.6e-48 195.3 178 79.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.6e-48 195.3 178 79.2
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 6.0e-48 194.9 188 71.8
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 6.0e-48 194.9 176 80.7
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 7.8e-48 194.5 179 64.8
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 7.8e-48 194.5 197 74.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.8e-48 194.5 148 77.7
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 7.8e-48 194.5 151 78.1
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 7.8e-48 194.5 150 82.7
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 7.8e-48 194.5 129 87.6
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.0e-47 194.1 106 88.7
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.0e-47 194.1 189 70.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.3e-47 193.7 181 69.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.7e-47 193.4 188 76.1
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.3e-47 193.0 156 71.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 2.3e-47 193.0 180 76.7
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.3e-47 193.0 108 87.0
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 3.0e-47 192.6 142 86.6
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 3.0e-47 192.6 150 74.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 5.1e-47 191.8 180 75.0
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 5.1e-47 191.8 148 83.1
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 5.1e-47 191.8 192 64.1
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 5.1e-47 191.8 144 84.0
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 5.1e-47 191.8 143 83.9
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.6e-47 191.4 160 71.9
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 6.6e-47 191.4 178 74.7
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 6.6e-47 191.4 151 74.8
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.5e-46 190.3 99 88.9
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.5e-46 190.3 182 75.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-46 189.9 179 78.2
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.5e-46 189.5 195 62.6
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 3.3e-46 189.1 136 72.1
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 3.3e-46 189.1 147 81.6
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 5.6e-46 188.3 200 71.0
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 5.6e-46 188.3 188 75.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.3e-46 188.0 188 68.1
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 7.3e-46 188.0 185 66.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 7.3e-46 188.0 185 66.5
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 1.6e-45 186.8 157 73.9
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-45 186.0 160 70.6
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-45 186.0 160 70.6
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.8e-45 186.0 160 70.6
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.1e-44 184.1 132 80.3
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-44 183.7 185 65.4
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.8e-44 183.3 91 94.5
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.8e-44 183.3 228 61.8
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.1e-44 182.6 107 79.4
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 5.2e-44 181.8 176 68.2
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 6.8e-44 181.4 156 69.9
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 6.8e-44 181.4 92 93.5
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 8.9e-44 181.0 161 67.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.2e-43 180.6 186 61.3
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.2e-43 180.6 153 75.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.5e-43 180.3 150 68.7
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.5e-43 180.3 137 68.6
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.4e-43 178.7 150 71.3
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 5.8e-43 178.3 142 82.4
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 5.8e-43 178.3 142 82.4
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 7.6e-43 177.9 90 93.3
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.6e-43 177.9 90 94.4
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 9.9e-43 177.6 180 73.3
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.9e-42 175.3 151 70.9
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 4.2e-41 172.2 127 70.1
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 7.1e-41 171.4 150 71.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 9.3e-41 171.0 186 73.1
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.1e-38 164.1 173 64.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.1e-36 157.5 98 91.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 3.8e-34 149.1 94 71.3
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 7.8e-32 141.4 126 61.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.3e-31 140.6 128 66.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.3e-30 135.6 80 76.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 5.3e-28 128.6 99 68.7
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.3e-26 124.0 61 93.4
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.4e-26 121.7 76 68.4
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-22 110.2 92 81.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 9.6e-22 107.8 92 59.8
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.1e-20 104.4 115 46.1
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 7.6e-19 98.2 107 57.0
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.9e-18 96.3 49 85.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 4.9e-18 95.5 192 43.2
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.9e-18 95.5 107 56.1
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-11 74.3 45 80.0
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 2.9e-10 69.7 83 51.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 3.8e-10 69.3 86 51.2
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 6.5e-10 68.6 83 51.8
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 8.4e-10 68.2 39 79.5
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 5.5e-09 65.5 83 50.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 5.5e-09 65.5 83 50.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 5.5e-09 65.5 83 50.6
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 3.0e-07 59.7 35 74.3


User provided reference genes

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