Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 0.0e+00 1969.1 977 100.0
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 0.0e+00 1263.1 1022 64.6
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 0.0e+00 1194.9 986 63.2
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 0.0e+00 1173.7 965 61.8
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 0.0e+00 1164.8 1031 58.8
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 0.0e+00 1161.4 978 61.8
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 0.0e+00 1133.6 1018 58.1
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 0.0e+00 1121.3 1016 58.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 0.0e+00 1115.9 994 58.2
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 0.0e+00 1110.1 1002 58.1
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 0.0e+00 1108.2 1001 59.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 0.0e+00 1100.9 992 58.1
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 0.0e+00 1098.2 1002 58.9
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 0.0e+00 1094.7 1027 56.0
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 0.0e+00 1086.6 984 57.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 0.0e+00 1079.7 980 57.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 0.0e+00 1077.0 1011 56.5
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.3e-311 1072.8 1015 55.5
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 3.3e-311 1071.6 973 58.0
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 4.7e-311 1071.2 1036 55.4
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.9e-310 1068.5 979 57.6
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 3.9e-310 1068.1 994 58.1
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 6.8e-307 1057.4 982 57.3
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 8.4e-305 1050.4 978 57.6
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 5.4e-304 1047.7 1015 54.7
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 1.0e-302 1043.5 1014 54.5
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.2e-298 1030.0 838 62.1
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.4e-296 1022.3 983 56.0
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 4.2e-296 1021.5 991 54.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 3.0e-294 1015.4 978 55.9
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 3.3e-293 1011.9 983 55.4
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 9.9e-290 1000.3 1000 54.8
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.8e-289 998.4 984 53.0
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 3.8e-289 998.4 938 56.3
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.9e-288 996.1 987 54.3
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.6e-287 993.0 973 54.5
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.1e-286 988.0 976 54.4
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.9e-285 986.1 834 60.4
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.9e-285 986.1 989 53.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.6e-284 983.0 1010 53.3
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 2.8e-284 982.2 968 54.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 4.9e-281 971.5 995 53.3
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 2.4e-280 969.1 990 53.8
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 4.6e-279 964.9 981 53.5
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.3e-278 963.4 806 62.2
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 2.3e-278 962.6 972 53.2
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.9e-278 961.8 1019 52.4
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.7e-276 955.3 1011 51.7
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 6.2e-276 954.5 970 53.1
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 2.4e-275 952.6 1012 51.5
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.2e-274 950.3 1004 51.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 3.2e-272 942.2 808 59.7
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 2.1e-271 939.5 897 56.1
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.3e-270 936.8 1009 51.6
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 6.7e-270 934.5 738 66.5
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.1e-267 927.2 1024 51.0
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 1.2e-266 923.7 993 50.2
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.7e-265 919.8 1004 50.4
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.7e-265 919.8 1021 50.7
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 5.5e-264 914.8 990 50.5
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 1.2e-263 913.7 990 50.6
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 8.7e-262 907.5 988 50.1
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 3.3e-261 905.6 997 49.4
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 1.3e-260 903.7 997 49.5
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 1.3e-260 903.7 990 50.3
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 4.1e-259 898.7 1014 49.0
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 5.3e-259 898.3 999 52.0
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.0e-257 894.0 1004 49.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.6e-255 886.7 1002 48.5
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 1.7e-252 876.7 990 49.8
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.9e-250 868.2 691 62.7
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 3.8e-249 865.5 998 49.2
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.2e-248 862.4 796 57.0
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 4.7e-247 858.6 993 48.8
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 2.9e-241 839.3 984 48.2
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 2.3e-238 829.7 968 47.2
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 6.7e-238 828.2 734 56.0
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.2e-236 821.2 780 56.3
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 5.9e-234 815.1 974 46.4
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.2e-231 807.4 806 55.0
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.6e-229 799.7 1019 46.8
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.3e-228 797.3 975 45.5
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.5e-221 773.9 611 64.3
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 9.6e-184 648.3 737 48.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.5e-160 570.5 990 37.0
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 6.5e-156 555.8 705 44.1
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 1.8e-153 547.7 539 53.2
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 2.4e-134 484.2 547 50.5
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 3.9e-129 466.8 1020 32.1
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 5.9e-125 453.0 369 63.1
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 5.0e-124 449.9 616 44.2
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.6e-106 391.7 1113 31.8
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 6.0e-77 293.5 425 41.9
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.4e-65 255.0 529 34.2
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.4e-62 245.7 466 32.4
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.1e-57 229.6 164 74.4
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.4e-57 229.2 185 64.9
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 7.6e-56 223.4 183 66.1
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-54 217.6 164 70.1
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 1.3e-52 212.6 164 68.3
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 4.5e-40 171.0 129 58.9
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 2.2e-39 168.7 93 77.4
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 2.3e-36 158.7 136 60.3
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 8.2e-34 150.2 416 30.3
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 5.5e-30 137.5 83 73.5
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 8.2e-26 123.6 99 67.7
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 9.1e-25 120.2 74 63.5
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-20 105.5 70 72.9
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.9e-20 104.8 295 29.5
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.1e-20 104.4 70 71.4
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 1.9e-14 85.9 66 59.1
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 3.9e-12 78.2 70 50.0
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 6.3e-10 70.9 60 65.0
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.4e-09 69.7 292 25.3
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.2e-08 66.6 203 25.1
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 2.0e-08 65.9 198 24.7
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 4.5e-08 64.7 198 25.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 7.7e-08 63.9 198 24.7
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 7.7e-08 63.9 190 26.8
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.0e-07 63.5 191 26.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.0e-07 63.5 198 25.3
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 1.3e-07 63.2 199 25.6
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 3.8e-07 61.6 198 24.2
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 3.8e-07 61.6 199 24.6
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 3.8e-07 61.6 199 24.6
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 5.0e-07 61.2 199 24.1
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 5.0e-07 61.2 199 26.1
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 6.5e-07 60.8 199 25.1
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.5e-07 60.8 228 23.7
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 6.5e-07 60.8 199 24.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 6.5e-07 60.8 199 25.6
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 6.5e-07 60.8 198 25.8
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 8.5e-07 60.5 199 23.6
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 8.5e-07 60.5 199 23.6
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 8.5e-07 60.5 199 24.6
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 8.5e-07 60.5 199 24.6
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 1.1e-06 60.1 199 25.6
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 1.1e-06 60.1 197 23.4
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 1.5e-06 59.7 193 24.9
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.5e-06 59.7 199 23.1
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.9e-06 59.3 198 24.2
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.9e-06 59.3 199 23.1
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.9e-06 59.3 199 24.1
Lsat_1_v5_gn_6_20981 Lactuca sativa HOM05D000442 ORTHO05D001242 1.9e-06 59.3 52 51.9
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 1.9e-06 59.3 198 23.7
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 1.9e-06 59.3 199 24.1
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 2.5e-06 58.9 192 26.0
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 2.5e-06 58.9 120 29.2
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 2.5e-06 58.9 200 24.0
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 3.2e-06 58.5 198 23.2
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 3.2e-06 58.5 198 23.2
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 3.2e-06 58.5 192 25.0
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 3.2e-06 58.5 199 22.6
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 3.2e-06 58.5 199 23.6
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 4.2e-06 58.2 194 26.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 4.2e-06 58.2 201 27.9
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 4.2e-06 58.2 193 28.5
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 5.5e-06 57.8 198 23.2
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 5.5e-06 57.8 200 26.5
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 5.5e-06 57.8 198 23.7
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 5.5e-06 57.8 193 23.3
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 5.5e-06 57.8 198 23.7
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 7.2e-06 57.4 228 22.4
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 7.2e-06 57.4 199 23.1
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 7.2e-06 57.4 199 22.6
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 7.2e-06 57.4 141 29.8
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 7.2e-06 57.4 192 27.1
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 7.2e-06 57.4 198 24.2
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 9.4e-06 57.0 203 21.2
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 9.4e-06 57.0 198 23.7
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 9.4e-06 57.0 191 25.7


User provided reference genes

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