Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13049 Davidia involucrata HOM05D001075 ORTHO05D003859 3.4e-167 591.7 313 100.0
Dinv44736 Davidia involucrata HOM05D001075 ORTHO05D003859 2.0e-119 433.0 311 76.2
TAR625G0559 Trochodendron aralioides HOM05D001075 ORTHO05D003859 1.1e-29 134.8 249 40.6
TAR381G0933 Trochodendron aralioides HOM05D001075 ORTHO05D003859 2.5e-29 133.7 147 53.7
GSVIVG01008977001 Vitis vinifera HOM05D001075 ORTHO05D003859 4.9e-25 119.4 145 50.3
CiPaw.03G137800 Carya illinoinensis HOM05D001075 ORTHO05D003859 7.1e-24 115.5 167 48.5
Haze_25002 Corylus avellana HOM05D001075 ORTHO05D003859 7.9e-23 112.1 152 46.1
TAR628G0181 Trochodendron aralioides HOM05D001075 ORTHO05D003859 1.0e-22 111.7 292 33.9
Nn5g28992 Nelumbo nucifera HOM05D001075 ORTHO05D003859 1.8e-22 110.9 165 41.2
COL.COLO4_11045 Corchorus olitorius HOM05D001075 ORTHO05D003859 1.9e-21 107.5 142 44.4
Sed0002631 Sechium edule HOM05D001075 ORTHO05D003859 7.4e-21 105.5 172 41.9
CAN.G535.16 Capsicum annuum HOM05D001075 ORTHO05D003859 2.8e-20 103.6 312 32.1
Cfa002724 Carpinus fangiana HOM05D001075 ORTHO05D003859 3.7e-20 103.2 153 43.1
Duzib147G1252 Durio zibethinus HOM05D001075 ORTHO05D003859 4.8e-20 102.8 158 43.0
Thecc.01G108000 Theobroma cacao HOM05D001075 ORTHO05D003859 6.3e-20 102.4 149 40.9
Oeu002183.3 Olea europaea HOM05D001075 ORTHO05D003859 1.1e-19 101.7 314 32.2
Duzib187G0230 Durio zibethinus HOM05D001075 ORTHO05D003859 1.4e-19 101.3 144 43.1
Actinidia20419 Actinidia chinensis HOM05D001075 ORTHO05D003859 4.1e-19 99.8 309 33.0
CiPaw.04G095100 Carya illinoinensis HOM05D001075 ORTHO05D003859 5.3e-19 99.4 134 43.3
CSS0032066 Camellia sinensis var. sinensis HOM05D001075 ORTHO05D003859 1.5e-18 97.8 132 46.2
Gohir.D03G044500 Gossypium hirsutum HOM05D001075 ORTHO05D003859 3.4e-18 96.7 168 37.5
MELO3C017577.2 Cucumis melo HOM05D001075 ORTHO05D003859 4.5e-18 96.3 170 38.2
Gorai.N021100 Gossypium raimondii HOM05D001075 ORTHO05D003859 4.5e-18 96.3 155 40.0
Dinv21954 Davidia involucrata HOM05D001075 ORTHO05D003859 7.7e-18 95.5 260 36.2
ClCG07G009410 Citrullus lanatus HOM05D001075 ORTHO05D003859 1.0e-17 95.1 169 38.5
CsaV3_4G004840 Cucumis sativus L. HOM05D001075 ORTHO05D003859 1.0e-17 95.1 146 41.8
CsaV3_UNG186470 Cucumis sativus L. HOM05D001075 ORTHO05D003859 1.0e-17 95.1 146 41.8
Peaxi162Scf00168g00311 Petunia axillaris HOM05D001075 ORTHO05D003859 1.3e-17 94.7 331 31.1
vmacro12932 Vaccinium macrocarpon HOM05D001075 ORTHO05D003859 2.2e-17 94.0 278 32.7
TWI74G0010 Tripterygium wilfordii HOM05D001075 ORTHO05D003859 2.9e-17 93.6 171 39.2
Cc00_g29380 Coffea canephora HOM05D001075 ORTHO05D003859 1.4e-16 91.3 163 38.7
Gohir.A02G133100 Gossypium hirsutum HOM05D001075 ORTHO05D003859 1.4e-16 91.3 168 36.3
PSO447G0249 Papaver somniferum HOM05D001075 ORTHO05D003859 1.4e-16 91.3 262 29.8
Ah.02g122880 Amaranthus hybridus HOM05D001075 ORTHO05D003859 1.9e-16 90.9 232 31.0
Rhsim10G0156100 Rhododendron simsii HOM05D001075 ORTHO05D003859 1.9e-16 90.9 245 34.3
TAR376G0571 Trochodendron aralioides HOM05D001075 ORTHO05D003859 1.9e-16 90.9 313 29.1
CANSAT01G1571 Cannabis sativa HOM05D001075 ORTHO05D003859 2.5e-16 90.5 180 35.6
Glyma.18G019700 Glycine max HOM05D001075 ORTHO05D003859 4.2e-16 89.7 248 33.5
MBI02_g37835_MAGBIO Magnolia biondii HOM05D001075 ORTHO05D003859 4.2e-16 89.7 126 42.9
Solyc04g072670.4 Solanum lycopersicum HOM05D001075 ORTHO05D003859 4.2e-16 89.7 351 28.2
Dinv16322 Davidia involucrata HOM05D001075 ORTHO05D003859 5.5e-16 89.4 138 44.2
Lj2C557T2 Lonicera japonica HOM05D001075 ORTHO05D003859 5.5e-16 89.4 87 51.7
arahy.Tifrunner.gnm1.ann1.CPIQ3I Arachis hypogaea HOM05D001075 ORTHO05D003859 7.2e-16 89.0 252 34.5
TWI77G0890 Tripterygium wilfordii HOM05D001075 ORTHO05D003859 9.4e-16 88.6 192 37.5
QL06p050576 Quercus lobata HOM05D001075 ORTHO05D003859 1.2e-15 88.2 181 37.0
SalBow5G4266 Salvia bowleyana HOM05D001075 ORTHO05D003859 1.2e-15 88.2 192 34.9
Gohir.A02G133000 Gossypium hirsutum HOM05D001075 ORTHO05D003859 1.6e-15 87.8 168 36.9
Gorai.003G045500 Gossypium raimondii HOM05D001075 ORTHO05D003859 1.6e-15 87.8 155 38.7
Gorai.N021200 Gossypium raimondii HOM05D001075 ORTHO05D003859 1.6e-15 87.8 155 38.7
Hma1.2p1_0308F.1_g120050 Hydrangea macrophylla HOM05D001075 ORTHO05D003859 1.6e-15 87.8 153 43.8
Glyma.11G237500 Glycine max HOM05D001075 ORTHO05D003859 2.1e-15 87.4 254 35.4
MD15G1329800 Malus domestica HOM05D001075 ORTHO05D003859 2.1e-15 87.4 186 39.8
Sopen04g028870 Solanum pennellii HOM05D001075 ORTHO05D003859 2.1e-15 87.4 353 28.6
arahy.Tifrunner.gnm1.ann1.ELEM58 Arachis hypogaea HOM05D001075 ORTHO05D003859 2.7e-15 87.0 254 33.1
Prupe.6G178400 Prunus persica HOM05D001075 ORTHO05D003859 2.7e-15 87.0 193 35.8
PGSC0003DMG401027531 Solanum tuberosum HOM05D001075 ORTHO05D003859 2.7e-15 87.0 311 30.2
Oeu024564.1 Olea europaea HOM05D001075 ORTHO05D003859 6.1e-15 85.9 317 30.0
PSO210G5101 Papaver somniferum HOM05D001075 ORTHO05D003859 6.1e-15 85.9 259 29.3
Sed0027467 Sechium edule HOM05D001075 ORTHO05D003859 6.1e-15 85.9 315 28.6
unitig_32.g10692 Utricularia gibba HOM05D001075 ORTHO05D003859 7.9e-15 85.5 146 39.0
Ciclev10025009m.g Citrus clementina HOM05D001075 ORTHO05D003859 1.4e-14 84.7 171 36.8
Manes.13G077700 Manihot esculenta HOM05D001075 ORTHO05D003859 1.4e-14 84.7 139 43.9
Phvul.001G250000 Phaseolus vulgaris HOM05D001075 ORTHO05D003859 1.4e-14 84.7 245 33.9
MD01G1022700 Malus domestica HOM05D001075 ORTHO05D003859 1.8e-14 84.3 163 39.9
AUR62002042 Chenopodium quinoa HOM05D001075 ORTHO05D003859 2.3e-14 84.0 233 30.0
Lj2A557T53 Lonicera japonica HOM05D001075 ORTHO05D003859 3.0e-14 83.6 80 53.8
Gohir.D03G044400 Gossypium hirsutum HOM05D001075 ORTHO05D003859 3.9e-14 83.2 191 29.3
Manes.13G090100 Manihot esculenta HOM05D001075 ORTHO05D003859 3.9e-14 83.2 155 42.6
SalBow5G5124 Salvia bowleyana HOM05D001075 ORTHO05D003859 3.9e-14 83.2 191 34.0
Cc00_g21700 Coffea canephora HOM05D001075 ORTHO05D003859 5.1e-14 82.8 265 31.7
Sc16g0003070 Simmondsia chinensis HOM05D001075 ORTHO05D003859 8.8e-14 82.0 54 77.8
vmacro18619 Vaccinium macrocarpon HOM05D001075 ORTHO05D003859 8.8e-14 82.0 65 67.7
CiPaw.04G094000 Carya illinoinensis HOM05D001075 ORTHO05D003859 1.5e-13 81.3 301 29.6
Potri.005G080500 Populus trichocarpa HOM05D001075 ORTHO05D003859 1.5e-13 81.3 195 34.4
AUR62003753 Chenopodium quinoa HOM05D001075 ORTHO05D003859 2.0e-13 80.9 56 69.6
Potri.007G086900 Populus trichocarpa HOM05D001075 ORTHO05D003859 2.0e-13 80.9 297 31.0
FvH4_1g21740 Fragaria vesca HOM05D001075 ORTHO05D003859 2.5e-13 80.5 53 79.2
FAN19G1171 Fragaria x ananassa HOM05D001075 ORTHO05D003859 2.5e-13 80.5 53 79.2
FAN23G2259 Fragaria x ananassa HOM05D001075 ORTHO05D003859 2.5e-13 80.5 53 79.2
PGR004G1876 Punica granatum HOM05D001075 ORTHO05D003859 2.5e-13 80.5 50 76.0
FAN26G1591 Fragaria x ananassa HOM05D001075 ORTHO05D003859 3.3e-13 80.1 55 76.4
FAN28G0934 Fragaria x ananassa HOM05D001075 ORTHO05D003859 3.3e-13 80.1 55 76.4
Medtr3g087830 Medicago truncatula HOM05D001075 ORTHO05D003859 3.3e-13 80.1 53 71.7
TPR.G21050 Trifolium pratense HOM05D001075 ORTHO05D003859 3.3e-13 80.1 53 71.7
EL10Ac6g15062 Beta vulgaris HOM05D001075 ORTHO05D003859 4.3e-13 79.7 199 33.2
Rhsim08G0008500 Rhododendron simsii HOM05D001075 ORTHO05D003859 4.3e-13 79.7 144 43.8
CAN.G535.15 Capsicum annuum HOM05D001075 ORTHO05D003859 5.7e-13 79.3 325 29.5
CDE10G0491 Ceratophyllum demersum HOM05D001075 ORTHO05D003859 5.7e-13 79.3 264 30.7
Hund13648 Selenicereus undatus HOM05D001075 ORTHO05D003859 5.7e-13 79.3 279 31.2
DCAR_011493 Daucus carota HOM05D001075 ORTHO05D003859 7.4e-13 79.0 135 35.6
THA.LOC104824862 Tarenaya hassleriana HOM05D001075 ORTHO05D003859 9.7e-13 78.6 337 29.1
ATR0564G189 Amborella trichopoda HOM05D001075 ORTHO05D003859 1.3e-12 78.2 74 51.4
Aqoxy6G00535_Aqoxy6G00536 Aquilegia oxysepala HOM05D001075 ORTHO05D003859 1.3e-12 78.2 320 26.9
CDE10G1172 Ceratophyllum demersum HOM05D001075 ORTHO05D003859 1.3e-12 78.2 262 33.2
Nitab4.5_0000214g0210 Nicotiana tabacum HOM05D001075 ORTHO05D003859 1.3e-12 78.2 253 30.0
Peaxi162Scf00168g00410 Petunia axillaris HOM05D001075 ORTHO05D003859 1.3e-12 78.2 310 29.7
RcHm_v2.0_Chr2g0115611 Rosa chinensis HOM05D001075 ORTHO05D003859 1.3e-12 78.2 51 78.4
Sabra07G0071900 Salix brachista HOM05D001075 ORTHO05D003859 1.7e-12 77.8 243 30.0
arahy.Tifrunner.gnm1.ann1.WI3M6V Arachis hypogaea HOM05D001075 ORTHO05D003859 2.2e-12 77.4 256 31.2
DCAR_001011 Daucus carota HOM05D001075 ORTHO05D003859 2.2e-12 77.4 117 41.0
Lj4g0008481 Lotus japonicus HOM05D001075 ORTHO05D003859 2.8e-12 77.0 91 49.5
SGA_v2.0_scaffold34G13609 Striga asiatica HOM05D001075 ORTHO05D003859 3.7e-12 76.6 79 50.6
unitig_88.g27730 Utricularia gibba HOM05D001075 ORTHO05D003859 3.7e-12 76.6 150 36.7
arahy.Tifrunner.gnm1.ann1.D1K6PT Arachis hypogaea HOM05D001075 ORTHO05D003859 4.8e-12 76.3 252 30.6
Sabra05G0066000 Salix brachista HOM05D001075 ORTHO05D003859 4.8e-12 76.3 161 34.8
Aa31LG6G15590 Aethionema arabicum HOM05D001075 ORTHO05D003859 6.3e-12 75.9 65 61.5
Gohir.A12G091100 Gossypium hirsutum HOM05D001075 ORTHO05D003859 6.3e-12 75.9 82 53.7
Gohir.D12G094500 Gossypium hirsutum HOM05D001075 ORTHO05D003859 8.2e-12 75.5 51 70.6
HanXRQChr15g0485441 Helianthus annuus HOM05D001075 ORTHO05D003859 8.2e-12 75.5 83 50.6
Lsat_1_v5_gn_2_67741 Lactuca sativa HOM05D001075 ORTHO05D003859 1.1e-11 75.1 60 65.0
Eucgr.I00375 Eucalyptus grandis HOM05D001075 ORTHO05D003859 1.8e-11 74.3 340 28.5
SGA_v2.0_scaffold47G17746 Striga asiatica HOM05D001075 ORTHO05D003859 1.8e-11 74.3 161 36.0
Lj6g0021202 Lotus japonicus HOM05D001075 ORTHO05D003859 2.4e-11 73.9 247 30.0
Psat5g088640 Pisum sativum HOM05D001075 ORTHO05D003859 3.1e-11 73.6 53 67.9
HPP92_019110 Vanilla planifolia HOM05D001075 ORTHO05D003859 3.1e-11 73.6 51 66.7
BcaB03g12267 Brassica carinata HOM05D001075 ORTHO05D003859 4.1e-11 73.2 47 70.2
CARHR247040 Cardamine hirsuta HOM05D001075 ORTHO05D003859 4.1e-11 73.2 47 74.5
Ca_16549_v3 Cicer arietinum L. HOM05D001075 ORTHO05D003859 4.1e-11 73.2 222 34.2
ECA238G4732 Erigeron canadensis HOM05D001075 ORTHO05D003859 4.1e-11 73.2 249 29.3
ATR0829G029 Amborella trichopoda HOM05D001075 ORTHO05D003859 5.3e-11 72.8 74 50.0
MSTRG.15735 Avicennia marina HOM05D001075 ORTHO05D003859 6.9e-11 72.4 246 31.3
Migut.L00096 Erythranthe guttata HOM05D001075 ORTHO05D003859 9.1e-11 72.0 95 48.4
AL7G11880 Arabidopsis lyrata HOM05D001075 ORTHO05D003859 1.2e-10 71.6 267 28.1
Lsat_1_v5_gn_4_139660 Lactuca sativa HOM05D001075 ORTHO05D003859 1.5e-10 71.2 77 46.8
Zm00001eb018610 Zea mays HOM05D001075 ORTHO05D003859 1.5e-10 71.2 255 30.6
A01p00570 Brassica napus HOM05D001075 ORTHO05D003859 2.6e-10 70.5 54 63.0
BolC1t00073H Brassica oleracea HOM05D001075 ORTHO05D003859 2.6e-10 70.5 140 36.4
BraA01t00064Z Brassica rapa HOM05D001075 ORTHO05D003859 2.6e-10 70.5 54 63.0
Nitab4.5_0000214g0200 Nicotiana tabacum HOM05D001075 ORTHO05D003859 2.6e-10 70.5 308 26.9
PSO675G1873 Papaver somniferum HOM05D001075 ORTHO05D003859 2.6e-10 70.5 219 33.3
Thhalv10024660m.g Eutrema salsugineum HOM05D001075 ORTHO05D003859 3.4e-10 70.1 262 27.9
VMungo1383G2292 Vigna mungo HOM05D001075 ORTHO05D003859 3.4e-10 70.1 159 35.2
Zm00001eb392330 Zea mays HOM05D001075 ORTHO05D003859 3.4e-10 70.1 271 26.6
Cpa.g.sc231.10 Carica papaya HOM05D001075 ORTHO05D003859 4.5e-10 69.7 335 26.6
ATR0307G099 Amborella trichopoda HOM05D001075 ORTHO05D003859 7.7e-10 68.9 250 28.4
Lalb_Chr11g0075221 Lupinus albus HOM05D001075 ORTHO05D003859 7.7e-10 68.9 54 63.0
Hund13649 Selenicereus undatus HOM05D001075 ORTHO05D003859 7.7e-10 68.9 323 29.7
BraA08t34299Z Brassica rapa HOM05D001075 ORTHO05D003859 1.0e-09 68.6 330 27.0
Atru.chr4.269 Acer truncatum HOM05D001075 ORTHO05D003859 1.3e-09 68.2 57 59.6
ECA232G4146 Erigeron canadensis HOM05D001075 ORTHO05D003859 1.3e-09 68.2 61 55.7
ATR0118G020 Amborella trichopoda HOM05D001075 ORTHO05D003859 1.7e-09 67.8 110 40.9
PGSC0003DMG402027531 Solanum tuberosum HOM05D001075 ORTHO05D003859 1.7e-09 67.8 357 26.9
Lalb_Chr08g0231231 Lupinus albus HOM05D001075 ORTHO05D003859 2.2e-09 67.4 164 32.9
BcaNung05548 Brassica carinata HOM05D001075 ORTHO05D003859 2.9e-09 67.0 222 30.2
Sed0000989 Sechium edule HOM05D001075 ORTHO05D003859 2.9e-09 67.0 158 32.9
PSO541G5252 Papaver somniferum HOM05D001075 ORTHO05D003859 3.8e-09 66.6 225 32.9
BcaNung00890 Brassica carinata HOM05D001075 ORTHO05D003859 5.0e-09 66.2 254 29.9
ECA238G0951 Erigeron canadensis HOM05D001075 ORTHO05D003859 5.0e-09 66.2 277 27.1
Os03g0383800 Oryza sativa ssp. japonica HOM05D001075 ORTHO05D003859 5.0e-09 66.2 50 56.0
THA.LOC104807709 Tarenaya hassleriana HOM05D001075 ORTHO05D003859 5.0e-09 66.2 296 29.1
SHI11631 Sapria himalayana HOM05D001075 ORTHO05D003859 6.5e-09 65.9 45 73.3
Carub.0007s0156 Capsella rubella HOM05D001075 ORTHO05D003859 1.1e-08 65.1 47 66.0
Sp7g36210 Schrenkiella parvula HOM05D001075 ORTHO05D003859 1.4e-08 64.7 311 23.8
BcaC01g00310 Brassica carinata HOM05D001075 ORTHO05D003859 2.5e-08 63.9 347 28.2
C01p00700 Brassica napus HOM05D001075 ORTHO05D003859 2.5e-08 63.9 260 29.2
C03p78120 Brassica napus HOM05D001075 ORTHO05D003859 2.5e-08 63.9 347 28.2
BolC3t20075H Brassica oleracea HOM05D001075 ORTHO05D003859 2.5e-08 63.9 347 28.2
Os07g0626200 Oryza sativa ssp. japonica HOM05D001075 ORTHO05D003859 3.2e-08 63.5 55 60.0
HanXRQChr15g0471691 Helianthus annuus HOM05D001075 ORTHO05D003859 4.2e-08 63.2 310 25.8
A08p23450 Brassica napus HOM05D001075 ORTHO05D003859 5.5e-08 62.8 337 26.4
Nitab4.5_0006636g0020 Nicotiana tabacum HOM05D001075 ORTHO05D003859 1.2e-07 61.6 311 27.0
Lalb_Chr23g0277271 Lupinus albus HOM05D001075 ORTHO05D003859 3.6e-07 60.1 243 27.2
MBI19_g28106_MAGBIO Magnolia biondii HOM05D001075 ORTHO05D003859 3.6e-07 60.1 66 48.5
Sopen04g028880 Solanum pennellii HOM05D001075 ORTHO05D003859 4.7e-07 59.7 51 56.9
Nitab4.5_0000518g0020 Nicotiana tabacum HOM05D001075 ORTHO05D003859 1.4e-06 58.2 233 27.5
Mapoly0042s0123 Marchantia polymorpha HOM05D001075 ORTHO05D003859 3.0e-06 57.0 50 58.0
AT4G39680 Arabidopsis thaliana HOM05D001075 ORTHO05D003859 3.9e-06 56.6 31 80.6


User provided reference genes

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