Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2525.0 1306 100.0
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2249.2 1304 89.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2228.0 1305 88.4
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2216.4 1308 86.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2192.9 1291 87.8
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2176.0 1306 85.9
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2161.3 1306 85.1
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2140.5 1305 83.8
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2140.2 1308 84.8
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2140.2 1306 83.5
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2127.4 1306 83.1
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2124.4 1306 83.1
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2122.1 1305 83.4
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2117.4 1306 82.8
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2117.0 1306 82.8
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2115.1 1308 82.3
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2114.0 1306 81.9
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2107.4 1306 82.1
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2106.6 1306 82.5
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2103.9 1308 82.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2100.1 1306 83.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2087.0 1305 80.8
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2082.4 1309 82.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2079.7 1304 81.7
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2074.7 1306 81.6
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2072.7 1305 81.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2070.8 1306 81.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2067.7 1323 80.0
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1340 79.3
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2062.0 1307 81.1
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2052.3 1307 80.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2045.0 1306 80.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2043.1 1306 79.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2043.1 1306 79.9
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1300 80.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1305 80.9
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1305 80.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1306 79.9
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1305 80.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2040.4 1306 79.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2040.0 1305 80.5
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2038.1 1306 80.3
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1306 80.2
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2033.1 1305 79.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2032.3 1306 80.1
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1355 79.6
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1307 79.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1306 79.5
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2023.4 1304 79.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2021.5 1306 78.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2021.5 1307 79.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2019.2 1307 79.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2018.4 1305 79.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1300 79.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2008.4 1306 78.9
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2000.7 1306 78.7
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1980.7 1306 77.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1972.6 1306 77.3
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1968.7 1299 77.5
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1962.6 1299 77.7
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1961.0 1305 77.9
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1943.3 1087 92.4
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1935.6 1310 76.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1932.1 1305 76.6
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1925.6 1305 75.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1910.6 1308 75.9
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1910.2 1305 75.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1910.2 1304 75.8
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1906.0 1301 74.9
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1904.4 1299 75.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1887.1 1307 74.6
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1884.8 1305 75.0
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1879.4 1305 73.6
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1862.0 1305 74.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1859.0 1270 75.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1858.2 1304 74.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1857.8 1304 73.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1856.3 1270 75.5
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1852.8 1304 73.7
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1848.6 1305 73.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1840.5 1304 72.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1837.8 1292 74.8
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1835.1 1304 73.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1830.5 1304 73.2
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1829.3 1314 73.1
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1825.4 1304 73.2
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1822.4 1314 72.6
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1820.8 1306 72.4
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1820.4 1303 72.8
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1809.3 1305 72.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1809.3 1314 72.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1808.9 1316 72.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1807.0 1312 72.2
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1807.0 1315 72.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1805.0 1314 72.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1804.6 1313 72.3
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1802.7 1305 72.1
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1757.7 1341 71.3
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1741.5 1273 71.3
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1741.5 1319 70.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1722.2 1305 70.3
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1694.5 1036 85.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1674.4 1292 67.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1664.0 1534 61.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1620.1 1301 65.1
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1587.0 1303 63.3
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1537.7 1087 74.4
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1389.4 1305 60.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1380.9 1326 55.9
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1379.8 1221 63.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1358.2 799 85.5
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1349.3 1344 55.6
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1326.6 1305 58.3
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1230.7 736 86.3
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1187.2 1087 61.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1139.4 1033 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1099.7 1117 54.9
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.8e-279 966.1 926 60.8
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.3e-273 946.4 769 63.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.8e-270 936.8 746 68.4
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 4.6e-266 922.2 710 68.5
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.1e-230 804.7 563 72.8
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-213 748.0 598 66.2
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.0e-192 677.6 439 83.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.5e-179 634.0 482 71.8
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.0e-164 585.5 709 49.8
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.1e-153 547.4 390 71.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 4.3e-147 526.9 581 53.5
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.3e-140 504.6 388 68.8
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.2e-127 461.5 399 62.2
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.4e-126 458.0 775 40.4
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 6.5e-111 406.8 343 65.0
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 9.4e-102 376.3 215 89.8
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.1e-93 347.1 350 57.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-88 330.9 179 87.7
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.3e-87 329.3 241 73.4
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.7e-82 312.4 229 70.3
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-82 312.4 224 70.5
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.5e-80 304.7 230 68.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.1e-77 293.9 273 61.5
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 8.6e-71 273.5 195 71.3
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 7.3e-62 243.8 1415 24.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 5.2e-60 237.7 1685 23.6
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.3e-54 218.4 1438 23.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.4e-49 202.2 189 61.4
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.2e-45 189.9 190 54.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.7e-42 178.3 218 54.1
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.5e-35 156.4 131 64.1
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.8e-34 151.8 130 60.0
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.5e-32 145.2 344 34.3
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 8.1e-29 134.0 101 73.3
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.6e-19 100.9 179 40.2
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-17 97.1 70 68.6
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.5e-16 92.0 112 51.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.2e-08 67.0 37 86.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.3e-07 63.5 149 29.5
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 3.9e-07 62.0 149 29.5


User provided reference genes

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