Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 0.0e+00 1322.0 747 100.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1130.2 750 85.1
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1108.6 748 78.3
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1103.2 749 78.8
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1100.1 737 80.6
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1098.2 803 74.8
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 0.0e+00 1095.1 752 80.9
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.5e-311 1072.4 754 77.1
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 2.0e-311 1072.0 752 77.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 8.6e-310 1066.6 752 76.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 4.3e-309 1064.3 748 78.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 3.6e-308 1061.2 748 77.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 6.2e-308 1060.4 751 78.4
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.3e-307 1058.5 753 76.2
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.0e-307 1057.7 754 75.5
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 2.6e-306 1055.0 755 75.4
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 5.8e-306 1053.9 739 77.4
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 6.0e-303 1043.9 752 76.6
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.3e-302 1042.7 690 80.6
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.7e-302 1042.3 810 74.9
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 2.3e-302 1042.0 796 74.2
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 8.6e-302 1040.0 749 76.2
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 9.5e-301 1036.6 748 75.9
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 3.6e-300 1034.6 748 77.0
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 3.6e-300 1034.6 743 76.2
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.1e-299 1031.6 744 75.7
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.0e-299 1031.2 748 75.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 8.9e-299 1030.0 759 73.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 2.0e-298 1028.9 745 76.1
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.6e-298 1028.5 741 74.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.6e-298 1028.5 748 75.4
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.3e-297 1026.2 749 74.4
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 3.8e-297 1024.6 744 75.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 9.2e-296 1020.0 749 74.2
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.3e-294 1016.1 753 73.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.5e-293 1011.9 742 73.9
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.6e-292 1008.1 738 74.1
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.1e-291 1006.5 752 73.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 9.0e-291 1003.4 756 71.7
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.5e-290 1002.7 756 71.8
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.0e-290 1002.3 762 73.1
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 9.9e-290 1000.0 749 72.6
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 2.2e-289 998.8 738 74.4
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 2.2e-289 998.8 744 75.0
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 4.9e-289 997.7 750 73.1
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.0e-286 989.9 748 73.1
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.9e-286 988.0 727 73.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.1e-285 986.5 747 71.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.5e-285 986.1 628 81.4
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.5e-285 985.3 747 73.2
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.3e-285 984.6 742 71.4
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 4.3e-285 984.6 594 84.0
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 5.6e-285 984.2 745 71.0
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.6e-284 982.6 747 73.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.1e-284 982.2 780 68.2
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 2.1e-284 982.2 742 73.3
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.8e-284 981.9 686 78.1
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 3.6e-284 981.5 625 81.4
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 3.6e-284 981.5 628 80.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.4e-283 979.5 628 80.7
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.9e-283 977.2 747 74.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 3.4e-282 974.9 734 73.0
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 7.6e-282 973.8 746 73.9
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.7e-281 972.6 588 84.2
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 3.8e-281 971.5 682 76.1
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.9e-280 969.1 625 79.8
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.2e-279 966.5 628 79.1
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 3.5e-279 964.9 738 74.8
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.3e-278 963.0 623 79.5
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 3.0e-278 961.8 623 79.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.5e-277 958.7 773 69.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.3e-276 956.4 759 72.1
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.8e-275 952.6 652 76.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 3.1e-275 951.8 654 79.4
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 6.9e-275 950.7 654 76.0
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 9.0e-275 950.3 732 69.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.0e-274 949.1 731 72.6
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.4e-273 944.1 725 72.3
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 6.4e-273 944.1 637 80.8
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.1e-272 943.3 506 91.3
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.9e-272 942.6 699 70.5
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.8e-267 926.0 744 66.4
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 5.3e-267 924.5 542 84.5
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.6e-266 922.2 753 69.9
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.4e-266 921.8 746 66.2
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.2e-265 919.1 699 71.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.0e-262 908.7 680 70.9
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.5e-261 905.6 752 65.8
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 8.5e-257 890.6 622 73.3
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.9e-256 889.4 761 68.3
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.1e-251 873.6 746 66.4
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.1e-248 863.6 473 87.9
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.4e-242 842.0 526 83.3
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.0e-238 830.5 618 69.4
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.0e-237 826.2 820 57.4
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.9e-233 812.4 753 66.4
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 2.3e-217 759.6 707 60.3
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.2e-215 753.8 620 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 5.6e-208 728.4 709 57.1
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 3.4e-205 719.2 507 68.4
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.0e-201 705.3 408 83.3
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.1e-190 669.5 637 62.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 8.3e-188 661.4 345 90.7
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 7.1e-179 631.7 545 57.1
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.2e-179 631.3 568 68.3
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 2.9e-172 609.8 467 62.3
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.4e-171 606.7 525 57.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.8e-167 592.4 361 79.5
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.8e-164 582.8 503 67.2
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.0e-132 478.4 495 55.4
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 3.8e-132 476.5 500 50.0
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 8.5e-124 448.7 543 45.9
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 8.8e-121 438.7 259 77.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.4e-112 410.2 537 44.5
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.0e-104 384.4 219 84.9
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.3e-103 381.7 395 61.8
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 5.4e-102 376.3 517 40.4
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 5.4e-94 349.7 179 92.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 3.4e-88 330.5 263 66.2
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 4.0e-73 280.4 380 53.2
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 6.4e-71 273.1 158 79.7
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.1e-58 231.5 173 67.1
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.2e-50 203.4 331 43.2
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.6e-45 187.2 98 89.8
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.6e-42 178.7 256 49.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.2e-42 176.8 255 49.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.9e-37 159.8 122 70.5
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 5.1e-28 130.6 314 37.6
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.2e-24 119.4 76 81.6
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-24 119.0 294 36.1
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 2.0e-24 118.6 241 47.7
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 2.3e-20 105.1 133 49.6
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.5e-19 101.7 181 43.1
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.8e-18 97.4 181 42.0
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.0e-15 89.7 77 66.2
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.0e-12 79.7 204 46.6
GSVIVG01001498001 Vitis vinifera HOM05D005363 ORTHO05D438841 8.2e-10 70.1 106 48.1
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 7.0e-09 67.0 69 73.9
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 3.8e-07 61.2 63 52.4
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 8.5e-07 60.1 81 53.1


User provided reference genes

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