Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1677.5 842 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1540.0 842 90.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1535.4 835 91.4
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1520.0 835 90.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1512.3 846 88.9
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1502.6 921 83.4
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1500.3 844 87.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1500.0 844 87.8
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1484.5 845 87.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1484.2 908 81.7
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1472.2 857 86.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1468.0 844 86.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1454.5 848 85.5
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1454.1 872 85.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1452.2 838 85.8
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1451.0 843 84.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1450.3 845 85.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1450.3 842 85.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1449.9 845 85.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1449.9 849 84.6
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1444.1 842 85.5
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1442.2 842 84.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1437.6 862 82.8
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1436.8 842 84.6
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1436.4 839 84.3
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1436.0 842 84.1
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 846 84.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1433.7 851 84.0
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1433.3 851 84.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1433.3 842 83.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1432.5 846 84.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1432.2 845 84.1
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1432.2 842 84.6
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1431.8 865 82.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1431.0 851 83.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1429.8 842 84.0
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1425.6 845 83.3
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1424.5 845 83.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 842 83.6
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 851 83.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 837 84.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1414.8 842 83.4
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1414.1 845 83.6
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1413.3 849 83.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1410.6 843 83.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1406.7 842 83.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1406.3 839 82.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1406.0 839 81.9
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1404.0 846 81.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1402.9 845 82.4
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 845 82.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 845 82.0
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1396.7 842 81.9
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1396.3 835 82.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1391.7 864 80.7
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1389.4 844 83.4
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1386.7 850 81.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 894 77.4
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1383.2 838 81.5
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 854 80.3
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 840 80.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1377.5 850 81.5
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1376.7 846 80.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 838 80.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 909 77.3
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1362.1 854 79.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 940 73.6
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 854 79.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 854 78.9
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1352.0 785 84.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 863 77.8
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 913 74.0
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 837 76.5
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 913 73.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 865 76.5
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 865 76.5
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 865 76.5
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1319.3 865 76.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 865 76.3
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 865 76.3
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 865 76.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 839 77.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1313.1 865 75.8
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1312.7 865 76.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 865 75.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1307.7 865 76.1
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1305.4 761 84.9
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1297.0 855 73.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1236.9 726 83.9
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1202.6 838 74.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1186.4 838 72.1
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1129.8 842 64.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1109.4 851 69.7
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1103.6 834 64.1
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1080.1 1141 55.2
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1079.3 882 65.1
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 0.0e+00 1075.1 849 69.0
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.2e-304 1049.7 838 60.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.1e-292 1008.4 622 79.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.1e-289 1000.0 726 73.4
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.4e-284 983.0 696 73.6
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.8e-280 968.8 805 63.7
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.9e-244 849.7 602 70.4
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-234 817.0 472 84.5
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-227 793.9 685 62.8
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.9e-212 743.4 405 87.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 4.2e-212 742.3 469 81.7
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-206 722.2 599 63.9
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 7.7e-206 721.5 432 84.0
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.1e-180 637.9 846 42.1
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-179 634.4 369 87.5
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.8e-176 622.5 356 83.4
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 6.5e-173 612.1 341 89.7
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 4.7e-163 579.3 856 38.7
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.6e-137 493.8 825 35.5
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 7.1e-127 459.1 431 57.1
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.1e-122 443.7 1006 30.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 4.9e-120 436.4 593 46.0
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.3e-115 421.8 327 59.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.6e-115 421.4 377 62.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.6e-110 404.8 260 74.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-102 378.6 332 55.7
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 3.0e-93 347.4 238 75.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 6.3e-83 313.2 165 92.1
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.2e-79 299.7 320 49.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.6e-78 298.5 218 67.9
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 3.7e-75 287.3 157 81.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-43 182.6 97 90.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.4e-43 180.3 116 76.7
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-38 165.2 101 78.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 8.0e-38 163.3 108 73.1
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-32 146.0 98 76.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-32 144.4 94 77.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-31 140.2 85 82.4
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-30 139.0 106 71.7
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.1e-30 138.7 167 52.1
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 4.7e-30 137.5 94 73.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-29 135.2 105 67.6
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 4.0e-29 134.4 87 77.0
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 8.9e-29 133.3 67 89.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.3e-27 129.4 96 71.9
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.2e-27 128.6 187 46.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-26 125.6 146 50.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-26 125.2 125 61.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 5.4e-26 124.0 100 67.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.7e-25 121.7 91 71.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.7e-24 119.0 75 73.3
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-23 114.4 88 68.2
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.1e-22 110.2 68 76.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.0e-20 105.5 197 37.1
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-20 104.0 115 52.2
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 7.6e-20 103.6 61 78.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-18 99.0 79 68.4
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-17 95.9 54 90.7
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 6.0e-17 94.0 52 86.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-16 92.4 52 84.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.8e-13 82.4 87 54.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.8e-13 82.4 87 54.0
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.8e-13 82.4 49 85.7
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.9e-11 75.1 37 97.3
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.4e-11 73.9 79 51.9
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.6e-09 69.3 34 94.1
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 6.0e-09 67.4 87 48.3
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 3.3e-07 61.6 32 93.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 7.3e-07 60.5 41 73.2


User provided reference genes

Program Settings