Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.4e-104 380.9 185 100.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.8e-83 312.8 176 83.0
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.2e-82 310.1 176 83.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.5e-82 309.7 176 83.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.7e-81 306.2 176 83.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.9e-81 304.7 176 81.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.1e-80 303.5 169 84.6
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.4e-80 303.1 176 81.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.9e-80 302.8 176 81.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.1e-80 300.8 176 80.1
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-79 300.1 176 80.1
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.2e-79 300.1 176 80.7
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.6e-79 299.7 176 81.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.1e-79 299.3 166 84.3
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 7.8e-79 297.4 174 78.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 7.8e-79 297.4 176 78.4
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.3e-78 296.6 176 80.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.3e-78 295.8 176 78.4
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-78 295.8 169 81.7
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-78 295.4 169 82.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-78 295.4 169 81.1
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.7e-78 293.9 169 81.1
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.9e-77 292.7 169 81.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.5e-77 292.4 177 79.7
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 2.1e-76 289.3 176 78.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.1e-76 289.3 176 77.3
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.1e-76 289.3 176 77.8
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 6.2e-76 287.7 168 77.4
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 6.2e-76 287.7 175 76.6
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 8.1e-76 287.3 173 77.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 8.1e-76 287.3 176 78.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 8.1e-76 287.3 176 79.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-75 287.0 176 77.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.4e-75 285.8 209 68.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.4e-75 285.8 176 77.3
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 3.1e-75 285.4 176 76.7
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 4.0e-75 285.0 176 76.7
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 4.0e-75 285.0 177 74.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 5.3e-75 284.6 168 80.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.3e-75 284.6 176 77.3
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 9.0e-75 283.9 176 75.0
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.2e-74 283.5 165 81.2
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.5e-74 283.1 176 76.1
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.5e-74 283.1 184 72.8
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.0e-74 282.7 176 77.3
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.4e-74 282.0 169 78.7
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.5e-74 281.6 176 74.4
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.6e-74 280.8 176 79.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-73 280.0 176 74.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-73 280.0 176 76.1
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.7e-73 279.6 176 74.4
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-73 279.6 176 73.3
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-73 279.6 176 73.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-73 278.9 176 74.4
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.9e-73 278.9 171 78.4
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.9e-73 278.9 176 74.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.9e-73 278.9 176 73.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.8e-73 278.5 176 75.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 3.8e-73 278.5 176 76.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.1e-72 276.9 169 76.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.4e-72 276.6 171 77.8
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.9e-72 276.2 166 79.5
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.9e-72 276.2 169 76.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.2e-72 275.4 176 75.0
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 7.1e-72 274.2 165 76.4
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.1e-72 274.2 176 75.0
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 9.3e-72 273.9 171 76.0
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.3e-72 273.9 176 73.9
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.5e-71 271.9 176 72.7
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.5e-71 271.9 167 75.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.6e-71 271.6 172 75.6
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 6.0e-71 271.2 176 74.4
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.0e-70 270.4 195 68.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.8e-70 269.6 176 72.7
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.3e-70 269.2 176 72.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.3e-70 269.2 148 84.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.9e-70 268.5 224 61.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.9e-70 268.5 177 74.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.9e-70 268.5 168 75.0
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.5e-69 266.5 168 74.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.3e-69 265.4 176 73.9
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 4.3e-69 265.0 148 82.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.6e-69 264.6 176 71.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.6e-68 263.1 176 71.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.6e-68 263.1 176 71.6
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 2.1e-68 262.7 148 83.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.8e-68 262.3 157 79.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.8e-68 261.5 176 69.9
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 4.8e-68 261.5 173 71.7
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-67 260.4 276 51.8
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.4e-67 260.0 176 72.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.0e-66 256.1 176 69.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.0e-66 256.1 176 69.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.0e-66 256.1 176 69.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 4.5e-66 255.0 145 82.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.3e-65 253.4 163 74.2
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.3e-65 253.4 171 71.3
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.3e-65 253.4 169 70.4
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 6.4e-65 251.1 176 68.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 8.4e-65 250.8 169 69.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.9e-64 249.6 169 68.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.9e-64 249.6 201 61.7
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.6e-63 246.5 219 58.4
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.7e-63 245.7 176 67.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 6.0e-63 244.6 145 78.6
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.5e-61 240.0 176 65.3
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 7.4e-61 237.7 134 81.3
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 4.8e-60 235.0 134 81.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 5.1e-54 214.9 133 77.4
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.3e-53 211.8 125 80.0
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.6e-52 209.9 177 61.0
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.5e-50 201.8 127 73.2
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 5.9e-50 201.4 172 59.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 3.8e-49 198.7 166 55.4
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 6.5e-49 198.0 176 56.8
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.3e-46 190.3 165 52.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 5.9e-42 174.9 157 49.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 8.5e-41 171.0 120 66.7
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-34 150.6 86 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 5.9e-34 148.3 130 53.1
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.9e-33 146.0 136 53.7
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 8.8e-30 134.4 81 79.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.4e-27 127.1 89 68.5
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.4e-27 126.3 156 38.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.1e-27 124.4 76 75.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.1e-27 124.4 76 75.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.6e-26 122.9 141 40.4
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.6e-23 112.5 72 69.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.1e-23 111.7 106 55.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 8.8e-22 107.8 154 36.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.4e-21 105.5 57 80.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.2e-20 103.2 165 37.6
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 8.2e-20 101.3 54 88.9
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 7.0e-19 98.2 51 84.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.5e-18 95.5 56 75.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-17 94.4 55 76.4
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.8e-17 92.4 56 73.2
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.5e-16 90.5 166 33.1
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.5e-16 89.7 86 55.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-15 87.4 54 72.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.6e-15 85.9 55 69.1
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-14 84.3 62 67.7
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.0e-14 82.4 56 62.5
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.0e-13 80.1 70 54.3
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.7e-12 77.0 137 31.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.9e-10 68.6 39 82.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-08 63.2 33 81.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 1.6e-07 60.5 30 93.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.8e-06 57.0 47 55.3
Medtr5g009450 Medicago truncatula HOM05D004647 ORTHO05D005349 8.8e-06 54.7 49 65.3


User provided reference genes

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