Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031909 Daucus carota HOM05D001816 ORTHO05D002001 1.3e-109 399.8 207 100.0
DCAR_028291 Daucus carota HOM05D001816 ORTHO05D002001 6.0e-104 380.9 245 84.5
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.0e-34 151.0 302 36.8
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 8.6e-34 147.9 138 55.1
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 4.3e-33 145.6 104 68.3
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 7.3e-33 144.8 104 66.3
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 7.3e-33 144.8 104 66.3
Oeu027898.1 Olea europaea HOM05D001816 ORTHO05D002001 7.3e-33 144.8 101 72.3
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 7.3e-33 144.8 101 72.3
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 7.3e-33 144.8 104 66.3
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 9.5e-33 144.4 104 68.3
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.6e-32 143.7 104 68.3
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 67.3
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 67.3
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 68.3
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 68.3
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 2.1e-32 143.3 107 64.5
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.1e-32 143.3 101 69.3
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 68.3
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 68.3
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 2.1e-32 143.3 104 68.3
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.8e-32 142.9 135 55.6
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.8e-32 142.9 135 55.6
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.8e-32 142.9 104 68.3
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 3.6e-32 142.5 104 64.4
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 3.6e-32 142.5 104 68.3
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 3.6e-32 142.5 104 68.3
Cc11_g00080 Coffea canephora HOM05D001816 ORTHO05D002001 4.7e-32 142.1 101 68.3
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 6.2e-32 141.7 104 66.3
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 6.2e-32 141.7 104 64.4
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 8.0e-32 141.4 104 63.5
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 8.0e-32 141.4 104 66.3
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 8.0e-32 141.4 104 65.4
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.1e-31 141.0 104 67.3
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 1.1e-31 141.0 104 68.3
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 1.4e-31 140.6 101 68.3
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.4e-31 140.6 101 67.3
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 1.4e-31 140.6 101 68.3
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.8e-31 140.2 104 66.3
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.8e-31 140.2 104 66.3
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.8e-31 140.2 104 66.3
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.3e-31 139.8 104 65.4
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 2.3e-31 139.8 104 65.4
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 3.1e-31 139.4 104 65.4
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 4.0e-31 139.0 104 64.4
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 4.0e-31 139.0 101 68.3
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.0e-31 139.0 104 64.4
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 5.2e-31 138.7 104 65.4
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 5.2e-31 138.7 104 64.4
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.2e-31 138.7 104 62.5
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 6.8e-31 138.3 101 65.3
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 6.8e-31 138.3 104 64.4
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 8.9e-31 137.9 104 64.4
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 8.9e-31 137.9 104 66.3
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 66.3
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 66.3
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 66.3
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 66.3
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 62.5
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 64.4
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.2e-30 137.5 104 63.5
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.5e-30 137.1 104 64.4
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.5e-30 137.1 104 64.4
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 1.5e-30 137.1 104 63.5
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 2.0e-30 136.7 104 64.4
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.6e-30 136.3 104 64.4
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 2.6e-30 136.3 104 64.4
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 2.6e-30 136.3 104 64.4
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 3.4e-30 136.0 104 65.4
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 3.4e-30 136.0 104 65.4
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 3.4e-30 136.0 104 64.4
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 65.4
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 65.4
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 65.4
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 65.4
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 4.4e-30 135.6 101 67.3
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 65.4
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 4.4e-30 135.6 104 63.5
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 5.8e-30 135.2 104 65.4
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 5.8e-30 135.2 104 63.5
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 7.5e-30 134.8 104 63.5
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 65.4
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 64.4
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 65.4
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 63.5
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 63.5
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 63.5
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 61.5
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 9.8e-30 134.4 104 60.6
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 9.8e-30 134.4 101 64.4
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 9.8e-30 134.4 101 62.4
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 1.3e-29 134.0 104 64.4
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 1.3e-29 134.0 104 61.5
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 1.7e-29 133.7 104 63.5
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.2e-29 133.3 104 60.6
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 3.7e-29 132.5 104 61.5
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 4.9e-29 132.1 104 59.6
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 4.9e-29 132.1 104 62.5
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 4.9e-29 132.1 104 60.6
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 6.4e-29 131.7 101 61.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 8.3e-29 131.3 104 60.6
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 8.3e-29 131.3 104 58.7
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.4e-28 130.6 104 59.6
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 1.4e-28 130.6 101 61.4
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.9e-28 130.2 104 61.5
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 2.4e-28 129.8 104 61.5
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 2.4e-28 129.8 111 56.8
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 3.2e-28 129.4 101 64.4
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 3.2e-28 129.4 104 59.6
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.2e-28 129.4 104 57.7
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 4.1e-28 129.0 133 54.1
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 5.4e-28 128.6 104 60.6
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 5.4e-28 128.6 104 60.6
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 58.7
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 58.7
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 58.7
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 58.7
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 58.7
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 9.2e-28 127.9 101 63.4
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 9.2e-28 127.9 104 59.6
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 1.2e-27 127.5 101 62.4
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 2.1e-27 126.7 104 57.7
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 2.1e-27 126.7 111 55.9
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.0e-26 124.4 101 60.4
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 2.3e-26 123.2 104 57.7
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 4.3e-25 119.0 104 53.8
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 7.3e-25 118.2 104 57.7
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.2e-24 117.5 104 53.8
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 4.7e-24 115.5 104 51.0
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 6.2e-24 115.2 104 51.9
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 1.4e-23 114.0 105 51.4
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.2e-22 110.9 104 52.9
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 1.5e-22 110.5 119 47.9
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 2.4e-20 103.2 105 43.8
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 2.4e-20 103.2 104 51.9
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 7.1e-20 101.7 69 72.5
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 7.1e-20 101.7 69 72.5
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 7.1e-20 101.7 69 72.5
Cpa.g.c28071.1 Carica papaya HOM05D001816 ORTHO05D002001 6.0e-19 98.6 68 67.6
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 6.6e-18 95.1 268 29.5
MELO3C027308.2 Cucumis melo HOM05D001816 ORTHO05D002001 8.6e-18 94.7 69 63.8
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 2.5e-17 93.2 104 49.0
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 2.5e-17 93.2 104 49.0
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 2.6e-14 83.2 72 51.4
MBI02_g31764_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.7e-13 80.5 58 69.0
CANSAT25G1750 Cannabis sativa HOM05D001816 ORTHO05D002001 4.2e-12 75.9 101 41.6
DCAR_028798 Daucus carota HOM05D001816 ORTHO05D002001 7.1e-12 75.1 63 71.4
SMO230G0008 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 1.3e-10 70.9 71 46.5
Aqoxy2G01448 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.1e-09 67.8 77 45.5
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.9e-07 58.5 34 79.4
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 2.0e-06 57.0 31 83.9
Cpa.g.c29104.1 Carica papaya HOM05D001816 ORTHO05D002001 2.6e-06 56.6 40 62.5
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 3.4e-06 56.2 103 33.0
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 3.4e-06 56.2 103 33.0
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 7.6e-06 55.1 42 66.7


User provided reference genes

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