Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028213 Daucus carota HOM05D002702 ORTHO05D003416 4.3e-82 308.1 180 100.0
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 1.0e-78 297.0 180 97.8
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 6.0e-76 287.7 179 93.3
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.7e-28 128.6 178 46.6
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.0e-27 125.9 175 45.7
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 3.0e-27 125.9 175 45.7
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 1.5e-26 123.6 151 53.0
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 2.0e-26 123.2 185 45.4
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 2.2e-25 119.8 180 51.7
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 6.3e-25 118.2 178 42.1
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.1e-24 117.5 153 45.1
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 2.4e-24 116.3 177 47.5
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 4.1e-24 115.5 179 52.0
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.1e-24 115.5 153 44.4
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 4.1e-24 115.5 183 42.6
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 4.1e-24 115.5 187 44.9
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 5.4e-24 115.2 181 44.2
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 9.2e-24 114.4 111 61.3
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 9.2e-24 114.4 187 43.9
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.6e-23 113.6 186 43.5
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.0e-23 113.2 179 41.9
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 2.0e-23 113.2 178 42.1
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 4.5e-23 112.1 183 42.6
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 7.8e-23 111.3 181 40.9
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 1.7e-22 110.2 191 41.4
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 1.7e-22 110.2 178 42.7
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 2.9e-22 109.4 179 45.8
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 2.9e-22 109.4 162 45.7
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 8.6e-22 107.8 185 47.0
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 1.5e-21 107.1 181 40.9
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 1.5e-21 107.1 108 60.2
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 3.3e-21 105.9 109 56.9
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 7.3e-21 104.8 178 44.9
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 7.3e-21 104.8 177 45.8
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 1.2e-20 104.0 153 53.6
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.2e-20 104.0 180 44.4
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 3.6e-20 102.4 178 51.7
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 4.7e-20 102.1 180 42.2
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 4.7e-20 102.1 178 43.8
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 8.0e-20 101.3 113 48.7
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 8.0e-20 101.3 126 46.8
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.8e-19 100.1 180 42.2
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 6.8e-19 98.2 171 39.8
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 6.8e-19 98.2 192 47.4
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 2.0e-18 96.7 186 41.4
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 2.0e-18 96.7 120 61.7
QL05p040842 Quercus lobata HOM05D002702 ORTHO05D003416 3.4e-18 95.9 189 42.9
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 4.4e-18 95.5 175 47.4
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 1.3e-17 94.0 187 39.6
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 1.7e-17 93.6 172 45.3
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.7e-17 92.4 187 39.0
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.7e-17 92.4 187 39.0
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 4.9e-17 92.0 118 48.3
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 6.4e-17 91.7 138 50.7
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 6.4e-17 91.7 186 43.5
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 1.1e-16 90.9 187 40.6
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 1.1e-16 90.9 91 57.1
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 1.4e-16 90.5 144 43.8
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 1.4e-16 90.5 122 45.9
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.8e-16 90.1 183 37.7
Dinv17311 Davidia involucrata HOM05D002702 ORTHO05D003416 2.4e-16 89.7 123 47.2
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 3.2e-16 89.4 152 43.4
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 3.2e-16 89.4 138 50.0
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 5.4e-16 88.6 178 42.1
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 5.4e-16 88.6 178 42.1
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 7.0e-16 88.2 177 46.9
Dinv17316 Davidia involucrata HOM05D002702 ORTHO05D003416 7.0e-16 88.2 123 50.4
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 9.2e-16 87.8 121 52.9
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 1.2e-15 87.4 194 38.1
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 1.6e-15 87.0 115 53.0
Oeu057252.1 Olea europaea HOM05D002702 ORTHO05D003416 2.0e-15 86.7 111 57.7
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 3.5e-15 85.9 174 34.5
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 7.8e-15 84.7 192 38.5
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.3e-14 84.0 194 44.8
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 1.7e-14 83.6 176 34.7
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 1.7e-14 83.6 189 36.0
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 2.3e-14 83.2 118 54.2
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 2.3e-14 83.2 182 37.9
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 3.0e-14 82.8 138 50.7
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 6.6e-14 81.6 116 47.4
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 6.6e-14 81.6 178 38.2
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 1.1e-13 80.9 155 42.6
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 1.5e-13 80.5 122 55.7
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 3.3e-13 79.3 108 45.4
QL05p040799 Quercus lobata HOM05D002702 ORTHO05D003416 5.6e-13 78.6 159 37.7
Psat3g086200 Pisum sativum HOM05D002702 ORTHO05D003416 9.5e-13 77.8 108 44.4
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 9.5e-13 77.8 91 53.8
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 1.2e-12 77.4 192 30.7
VMungo1383G3011 Vigna mungo HOM05D002702 ORTHO05D003416 1.2e-12 77.4 113 42.5
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 1.6e-12 77.0 186 36.6
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 2.8e-12 76.3 196 43.4
Phvul.001G106000 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 8.0e-12 74.7 110 46.4
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.8e-11 73.6 178 41.6
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.8e-11 73.6 141 41.1
Lj4g0025158 Lotus japonicus HOM05D002702 ORTHO05D003416 3.1e-11 72.8 115 35.7
Actinidia39727 Actinidia chinensis HOM05D002702 ORTHO05D019466 6.8e-11 71.6 192 33.9
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 6.8e-11 71.6 170 32.4
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 8.9e-11 71.2 187 35.3
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.5e-10 70.5 92 47.8
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 2.0e-10 70.1 108 39.8
VMungo1383G3234 Vigna mungo HOM05D002702 ORTHO05D003416 2.6e-10 69.7 108 44.4
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 4.4e-10 68.9 184 33.7
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 7.5e-10 68.2 117 38.5
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 1.3e-09 67.4 47 72.3
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 1.3e-09 67.4 183 41.0
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 1.7e-09 67.0 185 33.0
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 2.2e-09 66.6 117 45.3
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 2.2e-09 66.6 179 31.8
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 2.9e-09 66.2 181 35.4
Nitab4.5_0015985g0010 Nicotiana tabacum HOM05D002702 ORTHO05D003416 3.7e-09 65.9 98 44.9
Atru.chr2.1533 Acer truncatum HOM05D002702 ORTHO05D003416 4.9e-09 65.5 117 42.7
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.9e-09 65.5 182 33.0
SHI21361 Sapria himalayana HOM05D002702 ORTHO05D003416 8.3e-09 64.7 182 35.2
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 1.1e-08 64.3 111 43.2
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 1.4e-08 63.9 153 32.0
vmacro20470 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 1.4e-08 63.9 186 32.8
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 2.4e-08 63.2 171 32.7
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 2.4e-08 63.2 186 33.9
Sed0020965 Sechium edule HOM05D002702 ORTHO05D010786 3.2e-08 62.8 193 32.6
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 5.4e-08 62.0 196 36.2
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 7.0e-08 61.6 109 38.5
Lalb_Chr02g0157421 Lupinus albus HOM05D002702 ORTHO05D003416 9.2e-08 61.2 121 36.4
ECA233G5179 Erigeron canadensis HOM05D002702 ORTHO05D003416 2.7e-07 59.7 67 53.7
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 3.5e-07 59.3 181 32.0
AL2G39140 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 6.0e-07 58.5 122 46.7
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 6.0e-07 58.5 183 30.1
CARHR248300 Cardamine hirsuta HOM05D002702 ORTHO05D003416 6.0e-07 58.5 178 37.6
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 7.8e-07 58.2 123 36.6
DCAR_015631 Daucus carota HOM05D002702 ORTHO05D003416 1.0e-06 57.8 118 33.9
ClCG11G015790 Citrullus lanatus HOM05D002702 ORTHO05D010786 1.3e-06 57.4 174 27.0
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.7e-06 57.0 176 31.8
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 1.7e-06 57.0 112 36.6
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 1.7e-06 57.0 151 37.7
Zm00001eb304800 Zea mays HOM05D002702 ORTHO05D003416 1.7e-06 57.0 108 40.7
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 2.3e-06 56.6 116 35.3
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 3.0e-06 56.2 173 35.3
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 3.0e-06 56.2 128 35.9
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 6.6e-06 55.1 122 37.7


User provided reference genes

Program Settings