Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 1.2e-170 603.6 426 100.0
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 6.6e-89 332.0 300 66.0
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 6.2e-79 298.9 304 61.8
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 8.4e-76 288.5 298 59.4
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 3.6e-71 273.1 279 58.8
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 4.5e-69 266.2 282 59.2
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 5.8e-69 265.8 249 63.1
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 4.9e-68 262.7 246 63.4
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 2.4e-67 260.4 314 56.1
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 2.4e-67 260.4 294 54.1
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 3.2e-67 260.0 323 56.3
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 4.6e-66 256.1 347 49.9
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.3e-65 254.6 301 53.2
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.3e-65 254.6 241 61.8
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.3e-65 254.6 337 52.8
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 8.7e-65 251.9 336 52.7
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.1e-64 251.5 320 53.1
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.1e-64 251.5 332 52.4
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 5.6e-64 249.2 341 52.5
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 6.2e-63 245.7 284 57.7
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 6.2e-63 245.7 298 54.7
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 1.4e-62 244.6 333 52.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.8e-62 244.2 341 51.6
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 6.9e-62 242.3 258 60.9
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 9.0e-62 241.9 239 60.3
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.5e-61 241.1 302 54.3
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 2.0e-61 240.7 287 56.8
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.0e-60 238.4 349 52.4
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 2.9e-60 236.9 283 54.8
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 3.8e-60 236.5 295 55.3
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.6e-58 231.1 240 60.8
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.6e-58 229.6 269 53.5
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 3.0e-57 226.9 348 48.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 5.1e-57 226.1 234 60.3
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 5.1e-57 226.1 336 48.2
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 6.7e-57 225.7 214 61.7
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.5e-56 224.6 298 51.0
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 3.3e-56 223.4 336 47.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.6e-55 221.1 344 46.5
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 4.8e-55 219.5 253 54.5
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 6.2e-55 219.2 285 51.6
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 1.8e-54 217.6 296 51.7
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 1.8e-54 217.6 328 49.7
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 2.4e-54 217.2 289 49.5
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 5.3e-54 216.1 258 52.7
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 5.3e-54 216.1 293 51.5
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 5.3e-54 216.1 331 47.4
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.2e-53 214.9 338 49.7
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.5e-53 214.5 336 47.0
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 3.4e-53 213.4 284 51.4
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 4.5e-53 213.0 256 54.3
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 5.8e-53 212.6 339 46.9
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.0e-52 211.8 336 47.6
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.7e-52 211.1 335 45.1
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.2e-52 210.7 329 46.8
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 2.9e-52 210.3 344 46.5
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 3.8e-52 209.9 348 47.1
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.8e-52 209.9 240 55.0
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 6.5e-52 209.1 355 46.8
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.5e-52 209.1 281 50.9
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.5e-52 209.1 281 50.9
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 8.4e-52 208.8 302 51.3
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.9e-51 207.6 301 48.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.2e-50 204.9 268 51.9
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 1.6e-50 204.5 334 47.0
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 4.6e-50 203.0 322 46.6
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.0e-49 201.8 264 51.9
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.8e-49 201.1 344 44.2
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.3e-49 200.7 259 51.4
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.3e-49 200.7 201 62.2
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.0e-49 200.3 302 48.7
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.0e-49 200.3 297 48.5
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 6.7e-49 199.1 302 48.0
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.5e-48 197.2 322 43.8
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-47 194.9 328 44.8
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.6e-47 194.5 333 44.7
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.6e-47 194.5 328 45.4
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.8e-47 193.7 305 47.2
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.8e-47 193.7 256 53.1
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.7e-47 193.4 264 51.1
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.3e-47 192.6 292 47.6
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.8e-46 191.0 336 43.5
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.4e-46 190.7 256 52.7
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.1e-46 189.9 292 46.6
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 6.9e-46 189.1 292 48.3
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 9.0e-46 188.7 211 56.9
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 2.6e-45 187.2 280 50.0
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 4.5e-45 186.4 224 52.7
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 5.9e-45 186.0 270 48.9
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 5.9e-45 186.0 340 44.7
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 3.8e-44 183.3 228 51.3
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 6.5e-44 182.6 205 58.0
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.4e-43 181.4 282 43.6
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 2.5e-43 180.6 214 54.2
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.2e-43 180.3 182 59.9
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 9.4e-43 178.7 208 55.3
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 2.7e-42 177.2 191 54.5
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 7.9e-42 175.6 290 45.5
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 5.1e-41 172.9 195 55.9
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.3e-40 170.2 288 46.2
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 4.1e-38 163.3 170 59.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 9.1e-38 162.2 248 45.6
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.2e-37 161.8 284 41.9
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.0e-37 161.0 295 41.7
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.6e-37 160.6 164 55.5
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 3.4e-37 160.2 327 41.3
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.0e-36 158.7 288 42.4
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.4e-35 154.8 266 45.1
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 3.2e-35 153.7 263 45.2
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 5.5e-35 152.9 275 43.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 5.5e-35 152.9 258 46.9
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 5.5e-35 152.9 275 43.6
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 5.5e-35 152.9 275 43.6
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 5.5e-35 152.9 258 46.9
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.2e-34 151.8 161 54.7
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.2e-34 151.8 164 54.3
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.6e-34 151.4 236 46.2
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.0e-33 148.7 168 54.8
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.4e-33 148.3 161 55.3
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 3.9e-33 146.7 294 39.5
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.6e-32 144.1 195 49.7
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.7e-31 141.4 143 56.6
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 8.2e-31 139.0 254 42.1
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.1e-30 138.7 184 49.5
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.5e-27 128.3 260 40.8
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 1.2e-26 125.2 105 65.7
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.3e-25 120.9 183 44.8
Nitab4.5_0000914g0160 Nicotiana tabacum HOM05D003093 ORTHO05D023197 3.0e-25 120.6 211 45.0
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.0e-24 117.9 78 75.6
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 2.4e-22 110.9 253 37.5
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.2e-21 108.6 190 42.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 1.2e-21 108.6 272 36.8
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 2.0e-21 107.8 258 37.6
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 7.7e-21 105.9 142 54.9
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 1.7e-20 104.8 186 41.9
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 2.9e-20 104.0 180 41.1
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 3.8e-20 103.6 252 37.7
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.9e-19 101.3 271 35.1
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.5e-19 99.8 67 74.6
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 7.2e-19 99.4 222 36.9
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 7.2e-19 99.4 66 69.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.2e-16 92.0 218 39.0
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.2e-16 92.0 66 68.2
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 7.5e-16 89.4 151 44.4
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 3.1e-14 84.0 186 36.6
FAN25G2354 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.2e-12 77.8 197 39.6
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 2.9e-12 77.4 185 40.5
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 3.6e-10 70.5 191 33.5
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 4.7e-10 70.1 47 68.1
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 6.1e-10 69.7 79 44.3
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 2.0e-08 64.7 80 51.2
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 2.0e-08 64.7 71 56.3
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 6.3e-07 59.7 38 76.3
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 2.4e-06 57.8 40 70.0
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 5.4e-06 56.6 36 72.2
Psat2g026440 Pisum sativum HOM05D016485 ORTHO05D000844 9.1e-06 55.8 34 76.5
Psat2g026480 Pisum sativum HOM05D016485 ORTHO05D000844 9.1e-06 55.8 34 76.5


User provided reference genes

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