Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.9e-298 1028.5 534 100.0
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 3.3e-255 884.8 527 86.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.0e-224 783.5 485 81.2
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.4e-223 778.1 504 78.6
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.2e-222 775.8 493 79.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 2.8e-222 775.4 508 77.4
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 5.3e-221 771.2 513 77.0
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.0e-220 769.2 520 75.4
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 3.5e-220 768.5 519 75.3
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 5.9e-220 767.7 526 75.1
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 6.5e-219 764.2 526 75.1
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 8.5e-219 763.8 524 76.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.5e-218 763.1 508 76.6
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 1.9e-218 762.7 502 75.7
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.5e-218 762.3 526 74.7
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 7.2e-218 760.8 525 74.7
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.1e-217 759.2 490 76.7
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 4.7e-217 758.1 526 74.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 4.7e-217 758.1 517 75.6
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 8.0e-217 757.3 513 74.3
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.4e-216 756.5 497 77.1
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 2.3e-216 755.7 497 77.5
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 4.0e-216 755.0 490 77.1
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 4.0e-216 755.0 521 72.9
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 8.8e-216 753.8 521 74.7
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 4.4e-215 751.5 517 74.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 7.5e-215 750.7 505 74.5
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 9.8e-215 750.4 503 75.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.3e-214 750.0 515 73.6
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.2e-214 749.2 495 75.6
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.7e-214 748.4 496 74.6
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 6.3e-214 747.7 507 75.0
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.1e-213 746.9 500 75.6
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.1e-213 746.9 515 73.4
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.8e-213 746.1 514 75.3
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.1e-213 745.3 495 75.4
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 3.1e-213 745.3 499 76.6
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 7.0e-213 744.2 502 74.1
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.2e-212 743.4 504 73.6
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.6e-212 743.0 496 77.0
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.6e-212 743.0 515 74.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.7e-212 742.3 495 74.9
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.5e-212 741.9 502 75.5
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 3.8e-211 738.4 489 75.5
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 3.8e-211 738.4 497 75.7
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 5.0e-211 738.0 494 75.3
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.3e-210 735.3 525 71.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.3e-210 735.3 494 75.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 5.5e-210 734.6 494 74.7
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.8e-209 732.3 486 78.4
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 6.1e-209 731.1 489 75.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 8.0e-209 730.7 521 72.6
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.0e-208 728.8 511 72.2
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.2e-207 726.9 513 71.9
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 2.0e-207 726.1 515 72.4
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 2.0e-207 726.1 523 72.5
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.4e-207 725.3 508 73.2
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 3.4e-207 725.3 493 73.8
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 3.4e-207 725.3 494 75.1
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 5.7e-207 724.5 482 76.1
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 7.5e-207 724.2 542 70.8
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 9.8e-207 723.8 489 74.8
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 4.9e-206 721.5 503 73.4
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 4.9e-206 721.5 500 73.4
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 4.9e-206 721.5 516 72.5
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 8.3e-206 720.7 513 72.1
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 7.0e-205 717.6 503 73.4
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 2.7e-204 715.7 517 71.4
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.7e-204 715.7 504 72.0
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.5e-204 714.9 504 72.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.1e-202 710.3 500 73.0
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.9e-202 709.5 500 72.8
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.3e-202 707.6 504 71.6
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 4.7e-201 704.9 505 71.9
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.4e-200 703.4 491 71.5
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.8e-200 703.0 503 71.4
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 5.2e-200 701.4 504 71.2
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 6.8e-200 701.0 502 71.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 2.0e-199 699.5 496 72.2
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 2.6e-199 699.1 506 70.9
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 4.4e-199 698.4 496 71.8
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 4.4e-199 698.4 503 71.0
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 4.4e-199 698.4 502 71.5
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 4.4e-199 698.4 497 72.8
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 5.8e-199 698.0 502 71.3
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 4.9e-198 694.9 523 68.5
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 8.3e-198 694.1 509 69.9
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.4e-197 692.6 502 70.3
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 7.8e-196 687.6 569 65.2
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.0e-195 687.2 494 71.1
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.8e-192 674.5 476 72.1
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.3e-190 670.2 507 68.4
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.6e-185 653.3 507 67.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 5.2e-184 648.3 439 73.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.1e-181 640.6 520 64.6
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 7.8e-180 634.4 652 56.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.6e-177 625.5 518 63.5
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.3e-171 606.3 468 67.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 2.2e-166 589.7 504 60.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.4e-166 587.8 483 64.0
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.2e-165 585.9 384 74.7
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.4e-160 570.5 504 60.1
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.1e-154 550.8 522 56.5
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.8e-145 519.6 487 56.9
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-141 507.3 333 78.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.9e-131 472.6 368 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.9e-123 446.0 414 57.0
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.0e-102 378.3 560 43.4
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.6e-100 370.9 267 67.8
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.4e-98 363.2 282 66.7
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.2e-79 301.6 280 58.6
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.2e-76 291.6 370 47.6
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.4e-72 276.2 460 42.2
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 6.0e-71 272.7 170 77.1
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 3.9e-70 270.0 189 68.8
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 4.0e-59 233.4 149 78.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-54 218.4 137 73.7
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 5.1e-54 216.5 149 72.5
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 3.6e-52 210.3 233 49.8
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.2e-47 195.3 131 77.9
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 3.5e-47 193.7 132 78.0
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 5.8e-42 176.4 124 66.9
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.9e-40 171.4 146 61.6
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.4e-40 169.9 156 60.3
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-37 162.2 99 85.9
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-37 162.2 99 85.9
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.0e-34 151.4 297 37.4
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 4.9e-33 146.7 110 66.4
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-32 145.2 173 48.6
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 5.5e-32 143.3 217 40.6
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.1e-31 141.4 128 64.8
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.8e-22 111.7 118 52.5
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-18 99.0 90 63.3
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.3e-17 95.5 62 75.8
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 7.2e-16 89.7 195 34.9
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 2.3e-14 84.7 73 61.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.5e-13 81.3 65 70.8
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 4.1e-11 73.9 198 29.3
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 5.9e-10 70.1 62 54.8
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.8e-06 58.5 72 45.8


User provided reference genes

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