Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1414.4 730 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1219.5 731 86.3
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1218.4 731 86.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1208.4 731 86.0
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 731 85.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1200.7 731 84.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 731 84.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 731 84.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 732 84.4
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 732 84.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 733 84.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 731 84.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 722 84.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 723 84.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 731 83.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 731 83.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 734 82.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 731 83.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 732 83.2
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 728 82.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 731 82.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 731 82.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 731 82.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 731 82.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 731 82.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 731 82.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 713 84.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 737 82.9
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 727 83.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 732 82.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 725 81.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 727 82.5
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 759 79.2
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 731 82.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 731 82.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 731 82.5
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 731 82.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 731 80.4
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 730 82.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 715 83.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 731 82.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 708 83.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 708 83.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 708 83.8
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 717 82.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 736 82.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 707 83.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 732 82.1
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 716 82.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 714 82.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 731 80.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 720 82.6
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 717 83.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 748 79.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 694 85.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 758 79.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 732 81.6
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 731 79.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 708 83.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 708 82.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 731 79.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 731 79.6
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 731 81.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 729 79.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 728 79.1
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 731 80.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 728 79.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 731 80.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 731 79.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 714 82.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 732 81.0
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 728 79.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 728 78.8
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 728 78.8
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 728 78.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 707 81.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 709 81.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 732 79.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 749 78.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 691 82.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 731 78.4
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 733 79.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 708 80.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 709 81.1
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1103.2 705 80.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 715 79.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 720 78.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 763 75.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 793 73.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1085.9 743 77.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1081.6 720 77.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1076.6 719 76.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1075.1 773 73.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.3e-310 1069.3 731 75.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.1e-307 1057.4 689 80.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.3e-306 1054.7 763 74.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.5e-300 1034.6 719 75.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 9.6e-298 1026.5 729 74.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.1e-296 1021.1 764 69.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.2e-285 984.6 591 84.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.6e-279 965.3 631 80.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.4e-279 964.9 654 76.8
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.2e-273 943.7 712 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.2e-273 943.7 712 67.7
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 7.2e-269 930.6 705 66.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.0e-267 926.8 703 67.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.4e-267 926.4 584 80.3
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.6e-260 901.7 720 64.7
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.8e-259 899.4 554 83.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-258 896.7 566 79.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 8.3e-257 890.6 706 69.4
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.7e-255 885.6 589 77.8
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 5.0e-254 881.3 541 84.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.7e-246 856.3 697 67.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-233 813.5 519 81.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.6e-223 780.0 703 57.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.3e-213 745.7 713 54.4
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.7e-199 699.5 423 82.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.9e-193 678.7 493 75.1
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-150 536.6 328 80.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.1e-147 526.2 756 42.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 5.4e-139 499.2 796 36.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 7.5e-133 478.8 280 86.4
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.6e-127 459.9 273 84.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 9.2e-123 445.3 269 85.1
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.9e-115 421.0 382 58.9
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.6e-111 407.9 236 87.3
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.8e-110 404.4 233 86.3
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.3e-110 404.1 762 34.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 4.0e-110 403.3 253 80.6
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.1e-107 392.5 284 75.4
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.1e-102 378.6 275 74.5
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.8e-78 298.1 214 72.4
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.0e-78 295.8 187 78.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.7e-74 284.3 193 80.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.8e-69 266.5 148 84.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.2e-68 264.6 195 72.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.2e-59 233.0 192 69.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-56 224.9 155 65.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.2e-55 221.5 156 71.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.1e-54 217.6 164 72.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 5.0e-52 210.3 237 54.0
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.6e-50 205.3 203 60.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.7e-47 194.1 145 71.7
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.4e-46 192.2 137 75.9
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 3.5e-45 187.6 488 27.7
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.9e-43 181.8 105 85.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.6e-42 177.6 107 89.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.9e-37 160.2 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.2e-28 131.7 100 72.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-26 125.9 174 46.6
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.6e-26 124.4 100 69.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.6e-26 124.4 100 69.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.0e-25 122.9 72 86.1
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.3e-25 121.7 81 79.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.5e-24 116.7 92 68.5
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.4e-22 112.5 150 44.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 2.3e-20 105.1 69 71.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.6e-20 103.6 57 84.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.2e-19 100.9 61 78.7
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.6e-18 97.8 61 78.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.7e-18 97.4 77 64.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 6.8e-17 93.6 65 76.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-15 89.0 94 52.1
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.3e-12 78.6 81 50.6
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 4.3e-11 74.3 61 62.3
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-10 71.2 61 62.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.3e-09 68.6 40 85.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.0e-09 67.8 62 59.7


User provided reference genes

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