Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 0.0e+00 1272.3 680 100.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 3.3e-292 1008.1 672 81.5
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.4e-281 971.5 624 83.7
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 6.5e-280 967.2 674 78.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.1e-279 966.5 646 80.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 5.5e-279 964.1 640 79.8
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.2e-278 963.0 672 79.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 4.6e-278 961.1 674 77.7
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.8e-274 949.1 638 81.0
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 3.1e-274 948.3 650 78.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.0e-273 945.7 648 78.5
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.9e-273 944.1 700 74.3
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.2e-272 942.2 646 79.7
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.2e-272 942.2 654 79.4
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 3.8e-272 941.4 674 76.4
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 5.0e-272 941.0 630 81.1
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 8.5e-272 940.3 678 76.4
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 8.5e-272 940.3 674 78.2
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.9e-271 939.1 641 76.3
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 9.4e-271 936.8 655 78.0
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 4.6e-270 934.5 644 79.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.4e-269 932.9 621 80.8
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 2.3e-269 932.2 637 77.1
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 3.9e-269 931.4 710 72.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 5.1e-269 931.0 647 78.5
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 2.2e-267 925.6 640 79.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.4e-266 922.9 621 80.0
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 3.2e-263 911.8 639 77.3
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 3.2e-263 911.8 707 73.6
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.4e-263 910.2 593 81.8
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.1e-262 909.1 671 74.8
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.1e-262 909.1 646 76.2
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 7.9e-262 907.1 665 76.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.9e-261 904.8 668 75.6
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 8.8e-261 903.7 639 77.6
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.1e-260 903.3 609 79.5
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 4.4e-260 901.4 647 75.7
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.3e-259 899.8 642 75.7
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.7e-259 898.3 668 74.7
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 3.7e-259 898.3 648 75.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 6.3e-259 897.5 684 73.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 8.2e-259 897.1 648 76.4
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 3.1e-258 895.2 613 77.3
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.2e-257 893.3 673 72.7
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.0e-257 892.5 666 72.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.5e-257 891.3 671 75.0
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 7.7e-257 890.6 637 76.5
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 6.5e-256 887.5 645 75.8
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.1e-255 886.7 683 72.2
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.1e-255 886.7 649 74.7
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 4.2e-255 884.8 671 73.3
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 4.2e-255 884.8 646 74.8
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 5.5e-255 884.4 695 71.7
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.6e-254 882.9 649 74.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.1e-254 882.5 639 74.6
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.6e-254 881.7 647 75.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 4.0e-253 878.2 528 83.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.7e-253 877.5 672 72.3
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 8.8e-253 877.1 637 75.8
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.6e-252 875.5 606 76.7
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 7.5e-252 874.0 645 74.9
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 9.7e-252 873.6 664 73.2
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.7e-251 872.8 638 75.7
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 4.8e-251 871.3 601 75.5
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.3e-251 870.9 637 75.7
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.3e-251 870.9 647 74.3
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 6.3e-251 870.9 602 74.9
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.8e-250 869.4 640 73.3
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.1e-250 868.6 673 70.4
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 5.3e-250 867.8 563 79.4
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 7.0e-250 867.5 588 76.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.7e-248 862.8 675 70.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 3.8e-248 861.7 595 75.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 5.5e-247 857.8 600 75.3
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 5.5e-247 857.8 608 74.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 9.4e-247 857.1 575 76.5
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-246 856.3 585 76.2
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-246 856.3 585 76.2
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-245 853.2 638 74.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 6.8e-245 850.9 650 70.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 8.8e-245 850.5 755 66.6
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 2.9e-240 835.5 445 90.6
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.8e-240 835.1 651 70.2
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 3.6e-238 828.6 645 69.0
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 6.1e-238 827.8 643 69.2
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.3e-237 825.9 668 65.6
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.0e-237 825.5 472 84.3
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.8e-237 824.3 619 72.1
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-230 803.5 534 81.1
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 8.9e-229 797.3 645 71.0
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 7.8e-225 784.3 428 88.1
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.3e-224 782.7 601 72.5
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.0e-220 769.6 722 61.2
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 6.2e-214 748.0 638 67.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.4e-210 736.1 623 64.7
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 6.0e-201 704.9 667 59.8
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.0e-200 702.6 577 69.3
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.0e-196 689.9 574 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 2.1e-193 679.9 653 58.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.9e-186 656.8 451 70.3
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.9e-177 624.8 355 84.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.8e-172 608.6 636 60.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 6.5e-163 578.6 293 92.5
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.2e-161 574.3 499 56.9
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.3e-160 570.1 545 65.3
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.5e-159 567.4 516 66.9
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 8.5e-155 551.6 426 62.0
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.7e-153 545.8 429 60.6
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.2e-142 510.4 319 78.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.0e-120 438.3 256 78.5
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.5e-119 434.5 463 49.5
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.0e-112 409.8 496 46.6
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 8.6e-107 392.1 445 53.3
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 6.6e-99 365.9 353 68.6
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.4e-96 358.2 178 94.9
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.4e-95 353.2 680 37.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 6.4e-94 349.4 176 93.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 6.2e-89 332.8 263 67.7
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.0e-87 327.8 451 41.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 8.1e-73 279.3 157 81.5
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.4e-63 247.3 358 55.0
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.3e-59 234.6 172 67.4
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-42 178.7 273 48.7
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.0e-38 163.7 247 50.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.0e-38 163.7 246 50.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.8e-30 137.5 87 81.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.3e-25 120.2 254 43.7
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.4e-24 118.2 76 80.3
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.1e-21 109.4 219 53.9
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.9e-21 108.6 53 94.3
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-19 101.3 329 34.3
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.8e-19 100.1 244 37.3
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.8e-19 100.1 165 45.5
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 4.1e-16 90.9 114 52.6
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-13 82.8 156 42.3
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.8e-11 75.5 95 67.4


User provided reference genes

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