Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 8.0e-132 473.8 242 100.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.0e-110 402.1 239 82.4
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.0e-110 402.1 242 81.4
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.9e-110 401.7 234 83.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.0e-110 401.4 235 84.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.3e-109 398.3 233 83.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.4e-107 393.3 242 80.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.2e-106 390.2 236 80.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.6e-106 389.0 238 80.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 3.4e-106 388.7 234 81.6
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 5.8e-106 387.9 236 80.9
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 5.8e-106 387.9 237 78.9
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.5e-106 387.5 236 79.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 7.5e-106 387.5 236 80.9
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 9.8e-106 387.1 239 78.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.9e-105 385.6 236 79.7
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.4e-105 384.4 238 79.0
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.1e-104 383.6 236 80.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 3.2e-104 382.1 236 80.1
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 7.1e-104 380.9 236 78.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 7.1e-104 380.9 236 78.8
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 7.1e-104 380.9 234 79.1
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.6e-103 378.3 239 77.4
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 4.6e-103 378.3 233 77.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 6.0e-103 377.9 238 76.9
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.0e-102 377.1 238 76.1
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.0e-102 377.1 234 77.8
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-102 377.1 239 76.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.3e-102 376.7 235 80.4
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 77.4
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 76.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.7e-102 376.3 236 78.0
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.3e-102 375.9 240 78.3
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.0e-102 375.6 236 79.2
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 3.0e-102 375.6 237 78.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.9e-102 375.2 199 95.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 239 76.6
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 239 78.2
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 5.1e-102 374.8 236 77.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 5.1e-102 374.8 241 74.3
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.5e-101 373.2 231 78.8
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.5e-101 372.5 239 76.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.5e-101 372.5 236 77.5
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 4.3e-101 371.7 239 75.7
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.3e-101 370.9 237 76.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 7.3e-101 370.9 237 76.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.6e-100 369.8 246 73.6
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.6e-100 369.8 239 77.8
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-100 369.4 239 76.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-100 369.0 234 78.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.6e-100 368.6 235 77.0
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 6.2e-100 367.9 271 69.7
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 8.1e-100 367.5 239 76.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.4e-99 366.7 238 72.7
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.1e-99 365.5 222 81.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-99 365.5 239 76.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 5.2e-99 364.8 233 75.1
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.2e-99 364.8 233 76.8
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.2e-99 364.8 230 78.3
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.8e-99 364.4 239 76.6
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 6.8e-99 364.4 239 76.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-99 364.0 226 79.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 8.9e-99 364.0 234 76.1
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 8.9e-99 364.0 234 76.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-98 363.6 239 76.6
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.0e-98 362.8 226 78.8
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.4e-98 362.1 239 74.1
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.4e-98 361.7 234 76.5
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 5.8e-98 361.3 235 75.3
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 9.9e-98 360.5 226 77.9
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.7e-97 359.8 212 84.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.7e-97 359.8 253 71.9
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 6.4e-97 357.8 233 75.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.4e-96 355.9 213 81.7
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.2e-96 355.5 235 74.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.1e-96 355.1 228 76.8
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.1e-96 355.1 228 76.8
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.1e-96 355.1 228 76.8
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 5.4e-96 354.8 228 76.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.2e-95 353.6 228 77.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.6e-95 353.2 224 78.1
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.7e-95 352.4 231 75.8
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.5e-95 352.1 232 76.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 7.8e-95 350.9 235 73.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.8e-95 350.9 236 75.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 73.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.3e-94 350.1 226 75.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.3e-94 350.1 228 75.9
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.3e-94 349.4 226 76.5
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 3.9e-94 348.6 334 56.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.6e-94 347.8 235 73.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 6.6e-94 347.8 228 75.9
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.5e-93 345.9 205 80.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.6e-92 343.2 210 80.0
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.8e-92 342.4 294 61.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 4.0e-91 338.6 264 67.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.5e-90 336.7 228 73.7
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.6e-90 335.9 280 62.9
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.1e-88 330.5 236 71.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.4e-88 328.2 236 68.2
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 5.4e-88 328.2 191 82.2
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 9.3e-88 327.4 199 79.9
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.9e-85 319.7 204 76.0
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 6.9e-83 311.2 202 73.8
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.2e-81 306.2 235 67.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.0e-78 297.4 189 76.2
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.9e-78 295.4 174 78.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.4e-75 286.2 236 64.0
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.5e-74 282.0 238 60.1
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.2e-73 279.6 229 59.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.3e-70 270.4 228 57.5
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.5e-69 266.9 170 74.1
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-67 260.8 165 75.2
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.2e-64 248.8 147 81.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 7.4e-61 238.0 139 79.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-55 220.3 141 78.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-55 220.3 141 78.0
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 7.9e-55 218.0 194 55.2
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 8.2e-52 208.0 226 46.5
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.8e-51 206.8 132 72.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.2e-50 204.1 122 75.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.0e-50 203.4 127 81.1
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.2e-49 199.9 131 73.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.5e-48 196.4 182 59.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.6e-47 193.7 166 60.2
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 7.9e-47 191.4 121 77.7
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.1e-46 188.7 117 80.3
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 8.8e-46 188.0 117 80.3
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.5e-45 187.2 237 46.8
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.4e-42 176.0 120 71.7
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.8e-36 155.6 129 65.9
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 4.1e-35 152.5 145 57.9
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 5.0e-33 145.6 121 63.6
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.5e-33 145.2 101 75.2
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.5e-32 143.3 179 46.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-31 140.6 121 62.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.6e-31 139.4 85 74.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.4e-27 127.5 223 36.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.8e-27 127.1 69 84.1
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 7.7e-26 121.7 77 71.4
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.9e-25 119.8 145 38.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.8e-25 119.4 91 62.6
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.6e-23 112.8 100 64.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.4e-22 110.9 106 55.7
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.8e-20 103.2 72 72.2
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.8e-19 100.5 184 32.6
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.5e-18 95.9 54 83.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-16 91.3 51 78.4
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-13 81.3 62 62.9
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.3e-12 77.8 163 38.0
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-09 67.4 37 78.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-08 63.5 33 81.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 5.2e-06 55.8 30 83.3
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 8.9e-06 55.1 43 72.1


User provided reference genes

Program Settings