Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 0.0e+00 1856.6 963 100.0
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1097.0 867 68.7
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 0.0e+00 1085.9 969 62.7
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 2.7e-303 1045.4 823 67.2
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 6.1e-303 1044.3 974 61.8
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 9.1e-299 1030.4 968 60.7
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.0e-297 1024.6 961 61.2
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.6e-295 1019.6 908 61.8
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 3.4e-293 1011.9 997 58.6
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.7e-292 1008.4 941 60.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 3.5e-290 1001.9 831 65.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 2.3e-289 999.2 919 61.5
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.8e-289 998.4 971 59.1
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 1.9e-288 996.1 823 64.8
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 4.7e-287 991.5 921 61.1
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 3.0e-286 988.8 863 62.8
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 8.9e-286 987.3 992 57.6
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 7.5e-285 984.2 924 60.5
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.3e-284 983.4 893 61.4
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.2e-284 982.6 917 60.6
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.4e-283 979.9 882 61.1
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.9e-282 974.5 799 64.6
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 2.9e-281 972.2 958 57.9
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.8e-281 971.8 947 58.6
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.2e-279 966.8 825 62.9
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.6e-279 966.5 824 63.1
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 6.1e-279 964.5 943 57.8
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 4.0e-278 961.8 853 62.4
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.5e-277 959.9 834 62.1
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.5e-277 959.9 840 62.1
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.4e-277 958.7 906 59.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 3.4e-277 958.7 908 59.7
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 8.3e-276 954.1 888 59.2
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 8.3e-276 954.1 834 62.0
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.2e-275 952.2 981 55.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 4.1e-275 951.8 920 58.8
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 9.2e-275 950.7 1011 55.8
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 9.2e-275 950.7 993 57.2
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 3.5e-274 948.7 966 56.6
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.0e-273 947.2 823 62.6
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 3.0e-273 945.7 1020 55.6
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 5.6e-272 941.4 991 55.6
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 7.3e-272 941.0 960 56.5
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.1e-270 937.2 929 58.9
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.8e-270 936.4 972 55.7
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 1.8e-270 936.4 975 55.5
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.8e-270 936.4 956 55.8
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 2.3e-270 936.0 985 55.4
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 1.2e-269 933.7 952 56.7
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 1.2e-269 933.7 1013 54.3
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.6e-269 932.6 984 55.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.9e-268 928.3 909 57.2
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 8.3e-268 927.5 1004 53.7
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.9e-267 926.4 972 55.1
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 5.4e-267 924.9 843 60.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 8.6e-265 917.5 1037 54.2
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.1e-264 917.1 940 58.0
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 6.2e-263 911.4 990 54.5
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.1e-262 910.6 977 56.2
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 9.9e-261 904.0 969 55.2
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.2e-258 897.1 801 61.2
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 4.6e-258 895.2 893 56.9
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 4.6e-258 895.2 746 65.3
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 4.6e-258 895.2 1081 51.4
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.9e-257 892.1 829 59.5
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.5e-256 890.2 995 54.1
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.3e-256 889.0 700 67.6
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.0e-253 879.8 796 61.8
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 2.2e-252 876.3 799 61.0
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 6.4e-252 874.8 802 60.7
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 3.2e-251 872.5 981 53.7
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 5.4e-251 871.7 852 57.9
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 3.5e-250 869.0 826 59.8
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 1.7e-249 866.7 806 59.9
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 3.3e-248 862.4 741 62.9
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.6e-247 860.1 980 53.4
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 2.1e-247 859.8 948 53.9
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 8.1e-247 857.8 803 60.4
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 5.8e-245 851.7 800 59.2
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-244 850.1 814 58.7
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 3.5e-242 842.4 747 62.0
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 4.6e-242 842.0 797 58.8
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.0e-241 840.9 847 56.6
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-241 840.9 830 57.5
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.0e-241 840.9 847 56.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 2.3e-241 839.7 830 57.5
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 1.1e-240 837.4 800 58.6
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.3e-239 833.9 822 57.4
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 2.8e-239 832.8 820 57.4
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.6e-239 832.4 829 56.9
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 3.7e-231 805.8 897 53.6
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 2.4e-230 803.1 924 49.0
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 4.0e-230 802.4 820 56.1
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.4e-227 793.9 800 54.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 4.2e-227 792.3 913 52.1
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 5.7e-216 755.4 799 53.6
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 2.8e-215 753.1 802 54.5
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 2.9e-196 689.9 882 49.2
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.0e-172 611.7 837 46.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.9e-164 583.6 849 45.2
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.2e-158 563.5 507 60.2
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 3.6e-146 523.5 833 42.3
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 6.0e-141 506.1 838 40.6
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.1e-139 501.9 678 47.2
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.0e-132 478.8 582 50.2
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 7.8e-125 452.6 443 54.9
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.4e-121 441.0 354 64.7
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 8.5e-95 352.8 227 79.3
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 4.2e-94 350.5 1023 30.5
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.1e-89 335.9 404 47.5
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.6e-64 252.3 735 30.1
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-49 203.0 196 57.7
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 2.6e-43 181.8 273 40.7
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 1.9e-41 175.6 108 78.7
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 2.7e-40 171.8 107 79.4
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.9e-38 165.6 233 42.5
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 8.9e-36 156.8 287 40.8
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-28 133.3 170 47.1
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 5.2e-28 131.0 89 75.3
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 7.8e-24 117.1 823 24.5
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.3e-22 111.7 73 72.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-16 92.0 313 34.5
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.4e-12 79.7 95 42.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 3.1e-12 78.6 110 37.3
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 3.4e-11 75.1 95 41.1
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.4e-11 75.1 47 78.7
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.8e-11 74.3 89 41.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.9e-10 72.0 109 37.6
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.9e-10 72.0 95 40.0
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.9e-10 72.0 117 35.9
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 8.4e-10 70.5 89 41.6
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 2.4e-09 68.9 81 42.0
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.2e-09 68.6 138 31.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 4.2e-09 68.2 143 32.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.4e-09 67.8 117 35.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 9.3e-09 67.0 143 32.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.2e-08 66.6 64 48.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.6e-08 66.2 64 48.4
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.1e-08 65.9 147 31.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.1e-08 65.9 122 32.8
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.7e-08 65.5 139 28.8
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.7e-08 65.5 64 46.9
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.5e-08 65.1 89 40.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.5e-08 65.1 89 42.7
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 4.6e-08 64.7 143 32.2
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 7.9e-08 63.9 103 35.9
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 7.9e-08 63.9 103 35.9
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 7.9e-08 63.9 141 31.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.9e-08 63.9 64 46.9
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.7e-07 62.8 91 38.5
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.7e-07 62.8 82 36.6
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.7e-07 62.8 89 40.4
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 2.3e-07 62.4 143 30.8
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.3e-07 62.4 89 40.4
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.3e-07 62.4 66 50.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.0e-07 62.0 80 38.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.0e-07 62.0 65 47.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 3.0e-07 62.0 183 30.1
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.9e-07 61.6 63 44.4
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.1e-07 61.2 109 34.9
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 8.7e-07 60.5 143 32.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.9e-06 59.3 80 37.5
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.9e-06 59.3 64 43.8
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.9e-06 59.3 151 30.5
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 2.5e-06 58.9 116 33.6
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.5e-06 58.9 89 39.3
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 3.3e-06 58.5 135 29.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.3e-06 58.5 63 41.3
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.3e-06 58.5 122 32.8
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 4.3e-06 58.2 89 38.2
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.3e-06 58.2 63 41.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 7.4e-06 57.4 72 38.9
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 7.4e-06 57.4 64 43.8
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 9.6e-06 57.0 73 39.7


User provided reference genes

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