Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012964 Daucus carota HOM05D006734 ORTHO05D033711 5.6e-92 340.9 168 100.0
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 4.1e-18 95.5 47 80.9
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.6e-17 93.6 49 71.4
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 5.0e-16 88.6 44 77.3
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 8.6e-16 87.8 47 70.2
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 9.5e-15 84.3 44 70.5
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 9.5e-15 84.3 44 70.5
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 9.5e-15 84.3 98 43.9
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 9.5e-15 84.3 44 72.7
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 9.5e-15 84.3 44 72.7
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 1.2e-14 84.0 44 65.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.6e-14 83.6 46 67.4
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.6e-14 83.6 47 70.2
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.6e-14 83.6 47 63.8
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.6e-14 82.4 47 63.8
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.0e-14 81.3 46 67.4
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 8.0e-14 81.3 46 67.4
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.0e-13 80.9 46 65.2
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.0e-13 80.9 44 72.7
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.0e-13 79.3 42 73.8
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 3.0e-13 79.3 42 73.8
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.9e-13 77.8 44 68.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-12 77.4 47 61.7
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.0e-12 76.6 47 66.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 5.7e-12 75.1 47 61.7
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 5.7e-12 75.1 44 61.4
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 7.5e-12 74.7 35 80.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.9e-11 72.8 48 60.4
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 3.7e-11 72.4 46 58.7
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 4.9e-11 72.0 47 57.4
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 8.3e-11 71.2 48 62.5
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 8.3e-11 71.2 48 58.3
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.1e-10 70.9 40 72.5
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 2.4e-10 69.7 49 59.2
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.2e-10 69.3 41 58.5
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 7.0e-10 68.2 49 59.2
DCAR_011261 Daucus carota HOM05D006734 ORTHO05D008580 9.2e-10 67.8 38 89.5
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 9.2e-10 67.8 47 53.2
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 1.2e-09 67.4 35 74.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.6e-09 67.0 37 73.0
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.0e-09 66.6 47 55.3
SalBow1G2810 Salvia bowleyana HOM05D006734 ORTHO05D008580 2.7e-09 66.2 44 77.3
Ah.03g137010 Amaranthus hybridus HOM05D006734 ORTHO05D008580 3.5e-09 65.9 38 84.2
AUR62028415 Chenopodium quinoa HOM05D006734 ORTHO05D008580 3.5e-09 65.9 38 84.2
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 3.5e-09 65.9 48 56.2
PGR083G0596 Punica granatum HOM05D006734 ORTHO05D008580 3.5e-09 65.9 38 84.2
TWI36G0664 Tripterygium wilfordii HOM05D006734 ORTHO05D008580 3.5e-09 65.9 38 84.2
Actinidia36125 Actinidia chinensis HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Glyma.05G002300 Glycine max HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Lj2g0015195 Lotus japonicus HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Lalb_Chr02g0160561 Lupinus albus HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
MD17G1022100 Malus domestica HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Nn3g16685 Nelumbo nucifera HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Psat1g053400 Pisum sativum HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Prupe.3G294000 Prunus persica HOM05D006734 ORTHO05D008580 4.6e-09 65.5 38 84.2
Aqoxy3G01241 Aquilegia oxysepala HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 81.6
AL6G25190 Arabidopsis lyrata HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 81.6
AT5G14460 Arabidopsis thaliana HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 81.6
CARHR198850 Cardamine hirsuta HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 81.6
AUR62041944 Chenopodium quinoa HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 78.9
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 5.9e-09 65.1 47 53.2
TAR622G1243 Trochodendron aralioides HOM05D006734 ORTHO05D008580 5.9e-09 65.1 38 81.6
Ca_04141_v3 Cicer arietinum L. HOM05D006734 ORTHO05D008580 7.8e-09 64.7 38 84.2
Ciclev10014883m.g Citrus clementina HOM05D006734 ORTHO05D008580 7.8e-09 64.7 38 81.6
MBI15_g36475_MAGBIO Magnolia biondii HOM05D006734 ORTHO05D008580 7.8e-09 64.7 38 78.9
Manes.17G111000 Manihot esculenta HOM05D006734 ORTHO05D008580 7.8e-09 64.7 38 81.6
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 7.8e-09 64.7 48 54.2
FvH4_6g51780 Fragaria vesca HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
FAN02G4451 Fragaria x ananassa HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
FAN14G0563 Fragaria x ananassa HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
Medtr6g004400 Medicago truncatula HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
Phvul.004G004100 Phaseolus vulgaris HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 84.2
QL02p073991 Quercus lobata HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
RcHm_v2.0_Chr2g0173311 Rosa chinensis HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 81.6
VMungo0464G0440 Vigna mungo HOM05D006734 ORTHO05D008580 1.0e-08 64.3 38 84.2
BcaB08g36983 Brassica carinata HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
BcaC04g19033 Brassica carinata HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
C09p62720 Brassica napus HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
BolC9t59109H Brassica oleracea HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
BraA10t44473Z Brassica rapa HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
Cpa.g.sc108.78 Carica papaya HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
CiPaw.04G029800 Carya illinoinensis HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
ClCG09G019390 Citrullus lanatus HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
MELO3C021593.2 Cucumis melo HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
ECA232G1420 Erigeron canadensis HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
Thhalv10013219m.g Eutrema salsugineum HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
FAN09G4334 Fragaria x ananassa HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 78.9
Lsat_1_v5_gn_4_184340 Lactuca sativa HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 81.6
Lj7A601T102 Lonicera japonica HOM05D006734 ORTHO05D008580 1.3e-08 63.9 38 84.2
EL10Ac6g14101 Beta vulgaris HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 81.6
Carub.0006s1264 Capsella rubella HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 78.9
Cc07_g00010 Coffea canephora HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 84.2
COL.COLO4_29173 Corchorus olitorius HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 78.9
Dinv25724 Davidia involucrata HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 81.6
Potri.001G343100 Populus trichocarpa HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 78.9
Hund24869 Selenicereus undatus HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 78.9
GSVIVG01032383001 Vitis vinifera HOM05D006734 ORTHO05D008580 1.7e-08 63.5 38 78.9
Atru.chr6.2432 Acer truncatum HOM05D006734 ORTHO05D008580 2.3e-08 63.2 39 76.9
Haze_14760 Corylus avellana HOM05D006734 ORTHO05D008580 2.3e-08 63.2 38 78.9
Nitab4.5_0001562g0130 Nicotiana tabacum HOM05D006734 ORTHO05D008580 2.3e-08 63.2 38 81.6
Nitab4.5_0006683g0080 Nicotiana tabacum HOM05D006734 ORTHO05D008580 2.3e-08 63.2 38 81.6
PSO017G5381 Papaver somniferum HOM05D006734 ORTHO05D008580 2.3e-08 63.2 38 76.3
PSO819G0001 Papaver somniferum HOM05D006734 ORTHO05D008580 2.3e-08 63.2 38 76.3
Aa31LG11G15240 Aethionema arabicum HOM05D006734 ORTHO05D008580 3.0e-08 62.8 38 76.3
BcaB08g36998 Brassica carinata HOM05D006734 ORTHO05D008580 3.0e-08 62.8 46 67.4
Ciclev10003916m.g Citrus clementina HOM05D003913 ORTHO05D004803 3.0e-08 62.8 44 61.4
vmacro05878 Vaccinium macrocarpon HOM05D006734 ORTHO05D008580 3.0e-08 62.8 38 78.9
Sed0017476 Sechium edule HOM05D006734 ORTHO05D008580 3.9e-08 62.4 38 78.9
Sc07g0007780 Simmondsia chinensis HOM05D006734 ORTHO05D008580 3.9e-08 62.4 38 76.3
ATR0824G040 Amborella trichopoda HOM05D006734 ORTHO05D008580 5.0e-08 62.0 38 76.3
CDE09G1408 Ceratophyllum demersum HOM05D006734 ORTHO05D008580 5.0e-08 62.0 38 76.3
FAN05G5484 Fragaria x ananassa HOM05D006734 ORTHO05D008580 5.0e-08 62.0 38 78.9
Sp6g29560 Schrenkiella parvula HOM05D006734 ORTHO05D008580 5.0e-08 62.0 38 76.3
Zm00001eb267110 Zea mays HOM05D006734 ORTHO05D008580 5.0e-08 62.0 38 73.7
CAN.G473.21 Capsicum annuum HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 78.9
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 6.6e-08 61.6 33 69.7
Os05g0108000 Oryza sativa ssp. japonica HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 76.3
Solyc02g093460.4 Solanum lycopersicum HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 78.9
Sopen02g038210 Solanum pennellii HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 78.9
PGSC0003DMG400012609 Solanum tuberosum HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 78.9
SGA_v2.0_scaffold18G08271 Striga asiatica HOM05D006734 ORTHO05D008580 6.6e-08 61.6 38 78.9
CSS0015351 Camellia sinensis var. sinensis HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 78.9
CsaV3_5G027020 Cucumis sativus L. HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 76.3
Migut.H00068 Erythranthe guttata HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 78.9
Gohir.A05G354600 Gossypium hirsutum HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 73.7
Gohir.D04G058500 Gossypium hirsutum HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 73.7
Gorai.012G065200 Gossypium raimondii HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 73.7
Rhsim10G0014500 Rhododendron simsii HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 76.3
Sabra16G0222500 Salix brachista HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 73.7
Thecc.04G019600 Theobroma cacao HOM05D006734 ORTHO05D008580 8.6e-08 61.2 38 76.3
arahy.Tifrunner.gnm1.ann1.7L5D5L Arachis hypogaea HOM05D006734 ORTHO05D008580 1.1e-07 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.K7325H Arachis hypogaea HOM05D006734 ORTHO05D008580 1.1e-07 60.8 38 73.7
BolC2t08961H Brassica oleracea HOM05D003913 ORTHO05D033711 1.1e-07 60.8 38 63.2
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.5e-07 60.5 32 68.8
Eucgr.J02259 Eucalyptus grandis HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 73.7
HanXRQChr09g0255301 Helianthus annuus HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 76.3
Peaxi162Scf00129g01651 Petunia axillaris HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 76.3
Peaxi162Scf01972g00023 Petunia axillaris HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 76.3
Peaxi162Scf03028g00013 Petunia axillaris HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 76.3
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 1.5e-07 60.5 47 53.2
HPP92_004604 Vanilla planifolia HOM05D006734 ORTHO05D008580 1.5e-07 60.5 38 76.3
CANSAT64G2114 Cannabis sativa HOM05D006734 ORTHO05D008580 1.9e-07 60.1 38 76.3
unitig_748.g6980 Utricularia gibba HOM05D006734 ORTHO05D008580 3.3e-07 59.3 38 71.1
MSTRG.3137 Avicennia marina HOM05D006734 ORTHO05D008580 7.3e-07 58.2 38 73.7
SEGI_35368 Sequoiadendron giganteum HOM05D006734 ORTHO05D008580 9.5e-07 57.8 38 68.4
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.6e-06 57.0 62 56.5
DCAR_017105 Daucus carota HOM05D000504 ORTHO05D000403 2.8e-06 56.2 83 50.6
FvH4_3g23560 Fragaria vesca HOM05D000504 ORTHO05D000403 2.8e-06 56.2 101 44.6
FAN11G2999 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.8e-06 56.2 101 44.6
FAN16G1077 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.8e-06 56.2 101 44.6
FAN21G1246 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.8e-06 56.2 101 44.6
FAN25G0924 Fragaria x ananassa HOM05D000504 ORTHO05D000403 2.8e-06 56.2 101 44.6
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 3.6e-06 55.8 46 43.5
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 6.2e-06 55.1 35 60.0


User provided reference genes

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