Gene: Nn3g16685
General Information
Structural Information
- Species Nelumbo nucifera
- Gene Identifier Nn3g16685
- Transcript Identifier Nn3g16685.4
- Gene Type Coding gene
- Location chr3 : 8061478-8092715 : negative
Gene Family Information
- ID HOM05D006734
- #Genes/#Species 119/96
- Phylogenetic origin
- ID ORTHO05D008580
- #Genes/#Species 117/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nn3g16685.4
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G14460 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR032819 | tRNA pseudouridylate synthase B, C-terminal |
| IPR027935 | Protein dehydration-induced 19, C-terminal |
| IPR014780 | tRNA pseudouridine synthase II, TruB |
| IPR008598 | Drought induced 19 protein type, zinc-binding domain |
| IPR002501 | Pseudouridine synthase II, N-terminal |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| Mapman id | Description |
|---|---|
| 16.5.3.2 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruB) |