Gene: Sopen02g038210

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g038210
  • Transcript Identifier Sopen02g038210.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 58837466-58842429 : negative

Gene Family Information

  • ID HOM05D006734
  • #Genes/#Species 119/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g038210.1

Descriptions

  • Description Pseudouridine synthase family protein | FUNCTIONS IN: pseudouridine synthase activity, transporter activity | INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain , Pseudouridine synthase II, TruB, N-terminal, bacterial-type , Pseudouridine synthase II, TruB, N-terminal | BEST Arabidopsis thaliana protein match is: homologue of NAP57
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
InterProRNA modification
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G14460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014780 tRNA pseudouridine synthase II, TruB
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR002501 Pseudouridine synthase II, N-terminal
IPR032819 tRNA pseudouridylate synthase B, C-terminal
Mapman id Description
16.5.3.2 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruB)