Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 0.0e+00 1130.2 549 100.0
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 8.1e-281 969.9 535 88.0
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 3.0e-275 951.4 548 83.6
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 6.8e-272 940.3 547 82.6
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 8.9e-272 939.9 552 82.6
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.9e-269 932.2 590 78.0
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 5.4e-269 930.6 547 82.8
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 4.6e-268 927.5 550 81.6
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 1.0e-267 926.4 550 80.7
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 2.3e-267 925.2 547 82.3
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 3.0e-267 924.9 548 81.9
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 5.1e-267 924.1 552 80.3
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 5.1e-267 924.1 547 82.3
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 2.5e-266 921.8 551 79.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.3e-266 921.4 553 81.0
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 4.3e-266 921.0 547 81.9
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 5.6e-266 920.6 545 82.4
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 9.6e-266 919.8 552 82.1
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.2e-265 919.5 550 80.2
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.1e-265 918.7 590 76.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 2.8e-265 918.3 552 80.3
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 8.1e-265 916.8 547 81.7
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.1e-264 914.8 575 78.3
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 3.1e-264 914.8 549 81.4
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 4.0e-264 914.4 541 81.0
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 3.4e-263 911.4 549 80.7
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 7.6e-263 910.2 553 80.1
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.3e-262 909.4 558 79.4
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 3.8e-262 907.9 547 80.6
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 4.9e-262 907.5 548 79.4
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 8.4e-262 906.7 548 79.6
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.4e-261 905.2 547 80.8
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.2e-261 904.8 547 79.7
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 4.2e-261 904.4 550 79.3
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.2e-260 902.9 548 79.6
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.2e-260 902.9 547 79.5
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.7e-260 901.7 549 79.8
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 3.5e-260 901.4 553 78.7
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.5e-260 901.4 547 80.3
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.7e-259 899.0 550 78.9
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.0e-259 898.3 549 80.0
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.5e-258 896.0 550 78.5
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.5e-258 896.0 551 79.1
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 2.5e-258 895.2 548 78.3
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 3.3e-258 894.8 552 79.0
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 5.6e-258 894.0 547 79.0
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.6e-258 893.3 549 79.4
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 1.6e-257 892.5 549 79.1
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 2.8e-257 891.7 547 79.5
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 4.8e-257 891.0 574 76.0
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.4e-256 889.4 549 79.2
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 3.1e-256 888.3 549 79.4
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 3.1e-256 888.3 547 77.9
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 6.9e-256 887.1 556 77.5
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.4e-255 884.8 534 79.8
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 9.9e-255 883.2 548 77.2
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 3.8e-254 881.3 551 77.3
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.4e-253 879.4 556 76.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.6e-252 875.9 547 78.1
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 2.7e-252 875.2 532 78.8
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 2.7e-252 875.2 546 77.8
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 3.5e-252 874.8 534 78.7
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 4.6e-252 874.4 569 75.6
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 1.0e-251 873.2 535 78.7
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 8.7e-251 870.2 534 78.3
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.5e-250 868.6 532 78.8
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 2.5e-250 868.6 532 78.2
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.1e-249 865.5 535 79.1
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.1e-249 865.5 479 85.8
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 3.7e-249 864.8 549 77.6
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.3e-246 856.3 554 75.5
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 3.2e-245 851.7 552 76.3
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 4.2e-245 851.3 557 74.1
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 4.2e-245 851.3 551 75.7
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 7.1e-245 850.5 557 76.8
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-244 849.7 555 75.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.2e-244 849.7 555 75.3
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 3.5e-244 848.2 551 75.5
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.3e-243 846.3 556 75.4
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.0e-243 845.1 550 75.5
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 8.7e-243 843.6 550 75.5
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.5e-242 842.8 549 75.2
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.5e-242 842.8 552 76.3
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 7.4e-242 840.5 553 75.8
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 1.6e-241 839.3 552 75.2
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 6.2e-241 837.4 547 75.3
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 4.0e-240 834.7 547 74.4
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 2.0e-239 832.4 563 73.9
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 3.4e-239 831.6 540 75.9
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 5.8e-239 830.9 519 77.6
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 4.9e-238 827.8 550 74.4
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.1e-237 826.6 550 74.0
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 2.1e-236 822.4 553 73.4
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-234 816.6 562 72.6
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-233 813.1 562 72.4
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.3e-233 813.1 495 77.8
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.8e-230 801.6 543 71.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 5.0e-230 801.2 560 71.6
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 3.2e-229 798.5 576 70.0
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 3.2e-229 798.5 560 71.6
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.3e-222 776.5 551 70.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 8.2e-217 757.3 548 69.2
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 4.5e-215 751.5 549 67.8
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 5.9e-215 751.1 489 73.6
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.1e-212 742.7 411 83.9
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 4.1e-208 728.4 548 67.3
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.2e-207 726.9 550 65.8
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 7.7e-207 724.2 439 77.7
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 3.3e-202 708.8 478 71.5
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 3.2e-197 692.2 420 80.7
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 5.5e-197 691.4 448 76.3
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.0e-195 685.3 528 66.9
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.5e-181 640.2 411 73.2
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 4.4e-178 628.6 344 84.6
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 2.4e-152 543.1 490 55.3
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-150 537.3 428 65.0
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 6.6e-150 535.0 481 55.1
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 2.8e-148 529.6 297 83.2
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.4e-147 526.6 414 65.7
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 6.9e-139 498.4 347 70.0
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 7.6e-130 468.4 412 58.5
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 6.4e-129 465.3 464 50.6
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 2.7e-127 459.9 464 52.2
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.4e-120 437.6 345 67.0
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.5e-117 426.8 269 78.1
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.8e-94 350.9 230 78.3
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.3e-89 334.7 181 84.0
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.2e-85 321.6 181 82.3
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.6e-73 279.3 185 71.4
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 8.1e-55 219.2 135 72.6
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 5.4e-43 179.9 117 73.5
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 5.4e-43 179.9 104 78.8
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 8.9e-38 162.5 81 92.6
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 2.9e-28 131.0 67 89.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 2.6e-21 107.8 57 86.0
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 7.6e-21 106.3 59 81.4
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 7.6e-21 106.3 59 81.4
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.4e-19 101.3 56 83.9
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 5.6e-16 90.1 50 78.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 7.6e-13 79.7 75 56.0
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 2.8e-07 61.2 184 30.4


User provided reference genes

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