Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1712.6 834 100.0
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 801 78.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1293.9 801 78.4
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 797 79.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 802 77.7
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 794 78.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 775 79.6
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 787 78.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 800 76.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 801 76.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 800 75.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 800 76.2
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 801 77.3
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 798 76.6
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 801 76.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 798 76.3
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 801 75.8
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 800 76.1
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 801 75.5
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 800 76.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 802 75.7
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 801 75.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 804 75.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 799 75.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1247.3 800 75.6
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 801 75.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 800 75.6
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 798 74.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 801 75.3
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 800 75.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 806 75.3
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 798 74.7
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 800 74.9
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 802 75.6
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1243.8 801 75.8
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 812 72.9
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1241.5 801 74.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1241.5 800 75.1
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 801 75.4
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 798 75.8
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 801 75.0
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 801 74.2
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 803 75.1
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1238.8 801 75.5
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 800 74.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1237.6 803 74.6
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1237.6 801 74.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1237.6 803 75.1
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1236.9 811 73.7
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 800 76.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 802 74.9
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 802 75.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 801 74.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 798 73.8
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 801 74.3
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 798 73.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1234.2 799 74.3
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 800 73.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 800 74.8
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1231.5 800 74.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1231.5 805 74.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1231.1 798 73.4
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 805 74.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 798 73.2
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1226.5 798 73.2
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 803 73.6
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 798 73.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 798 73.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1222.2 798 73.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1222.2 804 74.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 798 73.2
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 798 73.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 800 74.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 800 73.5
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 798 73.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 798 73.2
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1217.2 797 74.2
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 798 73.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 796 73.7
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 800 72.8
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1204.9 800 72.6
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1203.3 831 72.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1191.4 880 67.3
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 860 68.4
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 854 68.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 801 72.0
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1173.3 797 72.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1172.9 852 68.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1170.6 797 70.6
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1170.6 805 70.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 802 73.1
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1164.8 801 71.4
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1164.4 906 66.1
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 800 71.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1163.7 800 71.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 798 70.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1151.3 799 70.3
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1149.8 800 69.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1149.8 800 68.2
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1144.0 757 72.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1143.6 784 72.6
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1133.2 801 68.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1130.2 816 69.2
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 797 69.9
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1126.3 956 62.4
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1120.5 800 67.6
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1110.1 800 69.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1090.9 965 59.1
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1078.5 799 69.1
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 7.4e-302 1040.4 807 63.3
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.5e-294 1016.1 815 61.5
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.9e-287 991.5 609 79.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 9.1e-284 980.3 805 63.7
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 5.0e-282 974.5 795 61.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.5e-270 936.4 797 60.2
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.4e-236 822.8 813 55.4
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 8.2e-184 648.3 882 43.5
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.6e-179 634.0 381 78.5
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 9.4e-164 581.6 830 40.5
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.1e-156 558.1 798 43.2
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 3.5e-142 510.0 934 34.3
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 8.8e-138 495.4 839 36.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.2e-118 431.8 407 55.3
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 6.0e-110 402.9 316 61.1
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.9e-103 381.3 244 70.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 5.2e-98 363.2 363 55.6
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 4.9e-80 303.5 224 68.3
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 6.5e-72 276.6 167 79.6
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.1e-68 265.8 180 71.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.1e-55 222.6 681 28.0
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.7e-51 208.8 109 93.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.9e-47 195.3 141 68.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 3.2e-39 167.9 191 52.4
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.6e-38 164.5 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 7.0e-34 150.2 271 38.7
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.2e-31 141.0 100 67.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.6e-30 139.0 133 48.9
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.7e-30 138.3 90 75.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.3e-29 135.2 180 44.4
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.4e-28 131.3 125 53.6
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.8e-27 128.3 80 76.2
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.8e-26 125.6 167 43.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.1e-26 124.8 120 56.7
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.2e-25 122.9 190 41.1
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 4.7e-22 110.9 109 56.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.6e-20 105.1 105 47.6
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 3.4e-20 104.8 72 68.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.5e-17 94.7 50 86.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.0e-16 93.2 249 28.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.7e-16 92.4 156 45.5
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.7e-16 92.4 101 51.5
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.3e-16 92.0 43 90.7
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 4.3e-15 87.8 56 80.4
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.2e-11 75.5 437 21.3
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 8.3e-11 73.6 71 60.6
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.8e-10 72.4 129 34.9
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.7e-09 68.6 71 54.9
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 4.6e-09 67.8 57 56.1
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 1.7e-08 65.9 158 32.3
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.6e-07 60.8 57 57.9
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 9.5e-07 60.1 57 57.9
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 9.5e-07 60.1 57 57.9
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.2e-06 59.7 290 22.8
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.1e-06 58.9 57 56.1
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.6e-06 58.2 54 59.3
TAR626G1591 Trochodendron aralioides HOM05D000344 ORTHO05D003478 3.6e-06 58.2 418 21.3


User provided reference genes

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