Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.2e-266 921.4 529 100.0
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.7e-219 766.1 419 85.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.2e-218 761.9 419 85.4
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 2.3e-216 755.7 421 84.8
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 3.9e-216 755.0 421 83.8
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 9.7e-215 750.4 454 79.7
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.4e-213 746.5 417 83.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.4e-213 745.7 421 82.9
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 4.1e-213 745.0 421 84.1
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.2e-212 743.4 422 83.6
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.2e-212 743.4 421 83.4
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 2.0e-212 742.7 422 83.2
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.4e-212 741.9 421 82.9
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.5e-212 741.5 428 82.2
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 4.5e-212 741.5 421 81.7
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 5.9e-212 741.1 421 82.9
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.3e-211 740.0 426 84.3
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.7e-211 739.6 421 81.9
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.8e-211 738.4 422 82.9
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 6.5e-211 737.6 422 83.2
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.1e-210 736.9 421 83.4
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 3.2e-210 735.3 414 84.8
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 5.5e-210 734.6 432 80.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 9.4e-210 733.8 423 82.7
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.6e-209 733.0 433 81.5
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 2.1e-209 732.6 420 81.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.1e-209 732.6 421 83.1
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 2.7e-209 732.3 422 80.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.7e-209 732.3 423 82.5
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 3.6e-209 731.9 420 81.9
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 4.6e-209 731.5 421 81.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 4.6e-209 731.5 420 81.9
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 7.9e-209 730.7 453 78.1
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.4e-208 729.9 421 81.2
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 8.8e-208 727.2 423 81.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.8e-208 727.2 425 83.1
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.0e-207 726.1 424 83.0
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.6e-207 725.7 424 82.1
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.7e-207 724.5 423 82.5
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-206 723.4 424 82.8
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-206 722.6 425 80.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-206 722.6 425 80.5
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.8e-206 722.2 434 80.2
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.8e-206 722.2 422 81.5
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.8e-206 722.2 421 81.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 4.8e-206 721.5 436 80.0
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.1e-205 720.3 422 80.6
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.4e-205 719.9 419 82.8
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.4e-205 719.9 424 81.6
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 4.1e-205 718.4 422 79.4
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.6e-204 715.7 421 81.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.3e-203 713.4 419 81.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.9e-203 712.2 460 75.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 8.5e-203 710.7 396 84.3
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 8.8e-200 700.7 393 84.0
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.6e-199 699.1 422 78.9
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 5.7e-199 698.0 455 74.1
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.4e-197 692.6 421 79.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.1e-197 691.8 424 78.5
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.1e-197 691.8 421 79.6
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 7.7e-196 687.6 463 71.9
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.7e-195 686.4 452 74.8
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.7e-195 686.4 427 78.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 2.2e-195 686.0 421 78.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 7.2e-194 681.0 423 78.5
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.2e-193 680.2 437 75.5
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.2e-193 680.2 425 78.4
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.6e-193 679.9 390 81.8
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.1e-193 679.5 425 78.4
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 8.8e-192 674.1 429 77.2
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.3e-191 672.2 418 77.3
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.9e-187 659.1 345 88.7
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 8.5e-187 657.5 421 76.0
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.6e-185 652.1 425 73.4
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 7.5e-183 644.4 422 73.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 8.3e-182 641.0 420 73.1
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.4e-181 640.2 421 73.2
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 3.5e-180 635.6 420 72.4
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.0e-179 634.0 420 72.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.5e-178 630.2 377 79.0
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-177 625.9 419 72.6
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-177 625.9 417 72.4
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.8e-176 623.2 420 71.7
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 3.0e-176 622.5 419 71.6
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.2e-175 620.5 423 70.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.6e-175 619.4 398 76.9
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.4e-175 619.0 424 71.2
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 7.5e-175 617.8 423 70.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-174 617.1 388 79.1
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.2e-174 616.3 433 70.2
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-173 613.6 433 70.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 4.1e-173 612.1 419 70.4
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.1e-173 612.1 420 70.5
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.9e-172 608.2 435 68.7
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 5.9e-172 608.2 475 66.9
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.9e-170 603.2 391 74.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 3.3e-170 602.4 421 69.8
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-169 600.5 425 68.5
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 8.0e-169 597.8 421 67.7
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.8e-168 596.7 391 74.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.6e-167 592.8 397 71.5
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.6e-167 592.8 420 69.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.9e-166 589.3 421 67.2
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.0e-163 579.3 395 72.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.6e-162 575.1 421 66.3
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 2.8e-161 572.8 315 84.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 8.9e-160 567.8 304 85.5
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 5.8e-151 538.5 341 75.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 5.2e-144 515.4 323 75.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 5.1e-139 498.8 339 72.3
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.9e-134 483.0 293 78.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.6e-132 477.2 310 74.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.6e-130 468.8 432 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 6.9e-128 461.8 423 55.1
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.7e-121 439.5 446 51.8
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.2e-119 434.5 327 66.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 7.6e-119 431.8 353 58.6
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.5e-114 416.8 324 63.9
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.0e-107 393.3 325 55.1
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 4.1e-104 382.9 215 80.0
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 8.5e-102 375.2 191 89.5
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 6.1e-92 342.4 427 46.6
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 5.3e-88 329.3 230 71.7
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 5.9e-87 325.9 259 64.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 3.6e-68 263.5 259 57.9
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-55 221.5 155 71.0
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 3.1e-51 207.2 114 84.2
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 4.1e-48 196.8 136 72.8
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 4.4e-42 176.8 169 58.0
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 5.8e-34 149.8 321 33.6
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.3e-30 137.9 107 68.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 6.2e-28 129.8 270 34.4
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 8.1e-28 129.4 79 78.5
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.4e-27 128.6 77 75.3
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 5.6e-21 106.7 320 28.4
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 5.3e-19 100.1 52 90.4
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.6e-18 96.3 80 57.5
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.1e-11 74.3 86 50.0
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.4e-08 65.5 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 1.6e-07 62.0 28 92.9


User provided reference genes

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