Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.4e-301 1038.9 532 100.0
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 4.6e-257 891.0 527 86.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.0e-227 793.5 486 81.5
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 5.1e-224 781.2 513 77.2
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.6e-223 778.9 494 78.7
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.3e-222 776.5 520 75.8
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.3e-222 776.5 495 77.8
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.8e-222 775.4 521 75.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.8e-222 775.4 495 78.0
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.2e-220 770.0 503 76.9
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.6e-220 768.8 505 75.6
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 5.9e-220 767.7 502 76.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.3e-219 766.5 508 77.0
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.9e-218 762.7 495 77.6
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 3.2e-218 761.9 504 77.0
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 3.2e-218 761.9 498 76.9
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 5.5e-218 761.1 499 76.2
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 7.2e-218 760.8 507 75.9
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 9.4e-218 760.4 522 74.3
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 9.4e-218 760.4 517 74.5
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.1e-217 759.2 493 76.7
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.4e-216 756.5 497 77.5
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 1.4e-216 756.5 491 76.0
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.4e-216 756.5 496 77.4
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.4e-216 756.5 517 74.3
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.8e-216 756.1 528 72.2
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.2e-216 754.6 493 76.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.1e-215 753.4 491 75.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.6e-215 752.3 493 76.1
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 3.3e-215 751.9 518 74.1
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 3.3e-215 751.9 494 76.5
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.3e-215 751.9 494 75.7
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 5.7e-215 751.1 515 74.0
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 7.4e-215 750.7 493 74.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.7e-214 749.6 495 75.8
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.7e-214 749.6 520 73.3
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.8e-214 748.8 492 76.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 4.8e-214 748.0 512 73.6
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.1e-213 745.3 523 72.5
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 3.1e-213 745.3 497 75.5
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 3.1e-213 745.3 506 73.5
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 4.1e-213 745.0 503 74.2
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 4.1e-213 745.0 505 73.5
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 9.1e-213 743.8 503 74.0
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.2e-212 743.4 496 74.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.6e-212 743.0 504 74.6
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 2.0e-212 742.7 499 75.2
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.5e-212 741.9 489 78.3
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.0e-211 740.3 492 75.2
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.0e-211 740.3 500 74.8
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.7e-211 739.6 492 75.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.8e-211 738.4 498 74.5
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.8e-211 738.4 512 73.2
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 3.2e-210 735.3 496 75.4
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 5.5e-210 734.6 495 73.9
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 7.2e-210 734.2 494 73.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 9.4e-210 733.8 483 76.2
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.2e-209 733.4 501 73.7
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 8.0e-209 730.7 506 72.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.0e-208 730.3 497 73.8
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.3e-208 729.2 495 73.9
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 4.0e-208 728.4 490 73.7
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 4.0e-208 728.4 520 72.3
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 8.8e-208 727.2 498 74.3
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 8.8e-208 727.2 493 74.6
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.7e-206 723.0 498 74.3
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 8.3e-206 720.7 514 71.4
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.6e-204 716.5 505 71.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 2.0e-204 716.1 496 73.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.3e-203 713.4 519 69.7
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 8.5e-203 710.7 493 71.8
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.2e-201 706.8 521 69.5
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.6e-201 706.4 519 69.2
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.6e-201 706.4 492 72.0
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.1e-201 706.1 502 71.5
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.7e-201 705.7 522 69.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.6e-201 705.3 504 71.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.0e-200 703.7 496 71.6
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.0e-200 703.7 522 69.7
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.3e-200 702.6 522 69.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 3.0e-200 702.2 523 68.6
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.0e-200 702.2 492 72.0
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 8.8e-200 700.7 524 68.9
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 9.8e-199 697.2 503 70.0
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 2.2e-198 696.0 494 71.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.8e-197 693.0 497 71.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 9.1e-197 690.6 523 67.9
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.2e-196 690.3 507 68.8
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.6e-196 689.9 476 73.1
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 4.5e-196 688.3 568 65.3
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.7e-195 686.4 500 69.4
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.2e-193 680.2 492 69.9
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 1.9e-186 656.4 440 73.4
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.8e-185 652.5 494 68.4
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 2.3e-184 649.4 491 67.8
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.7e-179 633.3 627 56.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.6e-179 630.9 529 62.4
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 2.3e-171 606.3 500 61.4
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 6.6e-171 604.7 469 66.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.3e-170 602.4 492 63.8
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.9e-167 590.9 385 75.3
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.1e-157 560.8 500 58.0
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.2e-156 557.4 494 58.9
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 3.5e-148 529.3 494 56.5
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.2e-142 510.0 334 77.5
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 6.0e-132 475.3 369 69.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.7e-126 457.2 415 58.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 5.1e-107 392.5 564 42.9
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 9.1e-104 381.7 267 70.0
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 7.5e-98 362.1 256 69.9
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 4.9e-81 306.2 280 59.6
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 9.5e-77 292.0 371 46.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.8e-72 277.7 462 41.3
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.0e-70 271.9 190 67.9
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.0e-67 261.9 176 73.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 3.3e-61 240.4 149 80.5
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 6.4e-57 226.1 149 74.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.8e-55 219.2 137 74.5
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 5.6e-53 213.0 234 50.4
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.9e-49 200.7 133 78.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 7.1e-48 196.1 133 74.4
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 8.9e-43 179.1 123 69.9
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.6e-42 177.6 146 63.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.8e-42 176.4 157 59.9
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 6.6e-38 162.9 99 83.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 6.6e-38 162.9 99 83.8
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.5e-34 150.2 295 38.6
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.7e-33 148.3 97 74.2
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.9e-33 147.5 133 64.7
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.4e-32 144.4 173 50.3
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.0e-31 139.8 198 42.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.2e-23 115.5 144 46.5
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.4e-19 101.3 86 67.4
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.8e-18 96.7 62 75.8
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 2.5e-16 91.3 107 46.7
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-13 82.0 50 80.0
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.3e-13 80.5 50 80.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 3.4e-10 70.9 200 29.5
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 6.5e-09 66.6 57 56.1
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 3.6e-07 60.8 72 47.2


User provided reference genes

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