Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004785 Daucus carota HOM05D000246 ORTHO05D009140 7.0e-303 1043.1 515 100.0
Lj1A109T41 Lonicera japonica HOM05D000246 ORTHO05D009140 5.2e-165 585.1 519 58.8
CSS0047282 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009140 1.3e-155 553.9 516 54.5
Rhsim13G0056800 Rhododendron simsii HOM05D000246 ORTHO05D009140 2.8e-150 536.2 524 54.2
HanXRQChr01g0013541 Helianthus annuus HOM05D000246 ORTHO05D009140 2.6e-148 529.6 502 54.6
Atru.chr10.2369 Acer truncatum HOM05D000246 ORTHO05D009140 4.9e-147 525.4 541 50.6
QL01p023430 Quercus lobata HOM05D000246 ORTHO05D009140 4.2e-146 522.3 533 52.7
vmacro02858 Vaccinium macrocarpon HOM05D000246 ORTHO05D009140 5.4e-146 521.9 556 51.3
Prupe.6G037500 Prunus persica HOM05D000246 ORTHO05D009140 2.7e-145 519.6 526 51.5
CANSAT54G0602 Cannabis sativa HOM05D000246 ORTHO05D009140 1.8e-144 516.9 522 51.3
CiPaw.13G059300 Carya illinoinensis HOM05D000246 ORTHO05D009140 1.1e-143 514.2 527 52.4
Potri.013G161200 Populus trichocarpa HOM05D000246 ORTHO05D009140 5.6e-143 511.9 529 52.0
CAN.G478.17 Capsicum annuum HOM05D000246 ORTHO05D009140 1.3e-142 510.8 528 50.9
Peaxi162Scf00293g00723 Petunia axillaris HOM05D000246 ORTHO05D009140 2.1e-142 510.0 538 49.6
Nitab4.5_0000539g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 8.1e-142 508.1 528 52.1
Sopen09g012230 Solanum pennellii HOM05D000246 ORTHO05D009140 8.1e-142 508.1 525 50.3
Manes.18G122300 Manihot esculenta HOM05D000246 ORTHO05D009140 1.8e-141 506.9 521 51.1
FAN11G0500 Fragaria x ananassa HOM05D000246 ORTHO05D009140 2.4e-141 506.5 528 51.7
FAN16G3185 Fragaria x ananassa HOM05D000246 ORTHO05D009140 2.4e-141 506.5 528 51.7
MD03G1046200 Malus domestica HOM05D000246 ORTHO05D009140 3.1e-141 506.1 532 49.4
Cc01_g15610 Coffea canephora HOM05D000246 ORTHO05D009140 4.0e-141 505.8 533 51.0
Oeu020449.1 Olea europaea HOM05D000246 ORTHO05D009140 2.9e-139 499.6 521 50.7
RcHm_v2.0_Chr5g0074061 Rosa chinensis HOM05D000246 ORTHO05D009140 8.4e-139 498.0 527 50.9
Sed0012503 Sechium edule HOM05D000246 ORTHO05D009140 1.4e-138 497.3 521 51.2
arahy.Tifrunner.gnm1.ann1.32IKG8 Arachis hypogaea HOM05D000246 ORTHO05D009140 1.9e-138 496.9 517 51.8
Hund18366 Selenicereus undatus HOM05D000246 ORTHO05D009140 4.2e-138 495.7 516 51.2
Solyc09g018690.4 Solanum lycopersicum HOM05D000246 ORTHO05D009140 4.2e-138 495.7 530 49.6
Medtr3g063040 Medicago truncatula HOM05D000246 ORTHO05D009140 6.0e-137 491.9 528 49.4
Glyma.18G048900 Glycine max HOM05D000246 ORTHO05D009140 1.0e-136 491.1 529 49.3
Lj6g0007866 Lotus japonicus HOM05D000246 ORTHO05D009140 1.8e-136 490.3 529 48.8
MELO3C008833.2 Cucumis melo HOM05D000246 ORTHO05D009140 3.0e-136 489.6 521 51.4
ECA248G0782 Erigeron canadensis HOM05D000246 ORTHO05D009140 3.0e-136 489.6 494 52.6
Duzib168G1839 Durio zibethinus HOM05D000246 ORTHO05D009140 5.1e-136 488.8 531 49.5
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 8.7e-136 488.0 519 50.5
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 5.6e-135 485.3 521 49.5
Lsat_1_v5_gn_5_176881 Lactuca sativa HOM05D000246 ORTHO05D009140 9.6e-135 484.6 501 52.1
CsaV3_4G012090 Cucumis sativus L. HOM05D000246 ORTHO05D009140 1.6e-134 483.8 523 50.9
Lalb_Chr15g0085521 Lupinus albus HOM05D000246 ORTHO05D009140 8.2e-134 481.5 531 48.8
TAR633G0607 Trochodendron aralioides HOM05D000246 ORTHO05D009140 5.3e-133 478.8 539 47.9
Phvul.006G082600 Phaseolus vulgaris HOM05D000246 ORTHO05D009140 9.0e-133 478.0 526 48.1
Psat5g146240 Pisum sativum HOM05D000246 ORTHO05D009140 9.0e-133 478.0 506 48.6
TWI74G1630 Tripterygium wilfordii HOM05D000246 ORTHO05D009140 2.6e-132 476.5 522 47.9
Haze_24501 Corylus avellana HOM05D000246 ORTHO05D009140 4.5e-132 475.7 516 50.6
Aqoxy5G02490 Aquilegia oxysepala HOM05D000246 ORTHO05D009140 7.6e-132 474.9 524 48.9
arahy.Tifrunner.gnm1.ann1.KDY275 Arachis hypogaea HOM05D000246 ORTHO05D009140 2.2e-131 473.4 501 51.3
AUR62037584 Chenopodium quinoa HOM05D000246 ORTHO05D009140 2.2e-131 473.4 502 50.2
Ca_15092_v3 Cicer arietinum L. HOM05D000246 ORTHO05D009140 4.9e-131 472.2 529 47.8
EL10Ac4g08390 Beta vulgaris HOM05D000246 ORTHO05D009140 8.4e-131 471.5 518 49.4
Actinidia11642 Actinidia chinensis HOM05D000246 ORTHO05D009140 7.1e-130 468.4 373 62.2
GSVIVG01024519001 Vitis vinifera HOM05D000246 ORTHO05D009140 3.9e-128 462.6 592 43.6
Sc12g0000050 Simmondsia chinensis HOM05D000246 ORTHO05D009140 4.3e-127 459.1 525 47.6
FvH4_3g41250 Fragaria vesca HOM05D000246 ORTHO05D009140 9.7e-127 458.0 488 51.0
MSTRG.18522 Avicennia marina HOM05D000246 ORTHO05D009140 4.1e-125 452.6 484 50.2
Sabra13G0128900 Salix brachista HOM05D000246 ORTHO05D009140 6.9e-125 451.8 503 47.7
ATR1127G158 Amborella trichopoda HOM05D000246 ORTHO05D009140 5.1e-120 435.6 534 46.1
Ah.04g164140 Amaranthus hybridus HOM05D000246 ORTHO05D009140 2.2e-118 430.3 530 46.2
MBI15_g11744_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 1.5e-116 424.1 491 47.9
MELO3C008825.2 Cucumis melo HOM05D000246 ORTHO05D009140 1.1e-114 417.9 416 52.9
ClCG04G005480 Citrullus lanatus HOM05D000246 ORTHO05D009140 2.3e-112 410.2 558 44.4
Glyma.11G201900 Glycine max HOM05D000246 ORTHO05D009140 1.5e-111 407.5 353 58.1
TPR.G37358 Trifolium pratense HOM05D000246 ORTHO05D009140 1.5e-111 407.5 475 48.0
Os07g0681600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D009140 2.8e-110 403.3 517 43.1
VMungo0540G2472 Vigna mungo HOM05D000246 ORTHO05D009140 9.1e-109 398.3 355 57.2
CsaV3_4G012100 Cucumis sativus L. HOM05D000246 ORTHO05D009140 1.5e-108 397.5 416 51.2
HPP92_014358 Vanilla planifolia HOM05D000246 ORTHO05D009140 3.8e-107 392.9 516 41.9
Zm00001eb330800 Zea mays HOM05D000246 ORTHO05D009140 9.7e-103 378.3 558 40.9
Nitab4.5_0002399g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 2.9e-91 340.1 425 46.1
SEGI_37344 Sequoiadendron giganteum HOM05D000246 ORTHO05D009140 3.8e-91 339.7 488 39.8
SMO367G0949 Selaginella moellendorffii HOM05D000246 ORTHO05D009140 5.4e-85 319.3 511 35.2
Ciclev10001421m.g Citrus clementina HOM05D000246 ORTHO05D009140 4.5e-84 316.2 383 46.0
AagrBONN_evm.TU.Sc2ySwM_228.2819 Anthoceros agrestis HOM05D000246 ORTHO05D009140 2.1e-81 307.4 531 33.9
Dinv17919 Davidia involucrata HOM05D000246 ORTHO05D009140 1.3e-75 288.1 214 66.8
Mapoly0130s0046 Marchantia polymorpha HOM05D000246 ORTHO05D009140 2.5e-74 283.9 406 38.7
Pp3c12_1610 Physcomitrium patens HOM05D000246 ORTHO05D009140 1.7e-70 271.2 377 38.5
SGA_v2.0_scaffold158G37461 Striga asiatica HOM05D000246 ORTHO05D009140 8.3e-70 268.9 239 59.0
TPR.G37336 Trifolium pratense HOM05D000246 ORTHO05D009140 3.7e-54 216.9 324 41.4
PGSC0003DMG402025422 Solanum tuberosum HOM05D000246 ORTHO05D009140 3.2e-53 213.8 262 44.3
CBR_g39230 Chara braunii HOM05D000246 ORTHO05D009140 4.0e-48 196.8 454 30.2
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 5.8e-47 193.0 228 48.2
Actinidia23144 Actinidia chinensis HOM05D000246 ORTHO05D009140 1.6e-44 184.9 152 59.2
MD11G1048500 Malus domestica HOM05D000246 ORTHO05D009140 1.6e-44 184.9 225 42.7
RcHm_v2.0_Chr5g0074051 Rosa chinensis HOM05D000246 ORTHO05D009140 2.1e-41 174.5 122 65.6
CsaV3_4G012080 Cucumis sativus L. HOM05D000246 ORTHO05D009140 9.0e-40 169.1 135 60.0
MD11G1048600 Malus domestica HOM05D000246 ORTHO05D009140 5.8e-39 166.4 151 55.6
MELO3C008835.2 Cucumis melo HOM05D000246 ORTHO05D009140 4.9e-38 163.3 124 60.5
VMungo0540G0783 Vigna mungo HOM05D000246 ORTHO05D009140 7.9e-36 156.0 195 45.1
Zm00001eb239640 Zea mays HOM05D000246 ORTHO05D009140 3.2e-29 134.0 90 63.3
Atru.chr10.2371 Acer truncatum HOM05D000246 ORTHO05D009140 1.5e-23 115.2 183 41.0
PRCOL_00005634 Prasinoderma coloniale HOM05D000246 ORTHO05D009140 1.4e-21 108.6 243 29.2
FAN12G4280 Fragaria x ananassa HOM05D000289 ORTHO05D209272 1.0e-19 102.4 163 42.9
TPR.G37424 Trifolium pratense HOM05D000246 ORTHO05D009140 2.2e-14 84.7 46 76.1
CDE08G1044 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 1.8e-11 75.1 238 27.3
Cre12.g490150 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D009140 1.8e-11 75.1 230 26.5
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 3.9e-11 73.9 242 26.9
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 8.7e-11 72.8 242 26.9
Nn2g14796 Nelumbo nucifera HOM05D000246 ORTHO05D005396 1.1e-10 72.4 237 24.9
Ciclev10001180m.g Citrus clementina HOM05D000246 ORTHO05D009140 1.5e-10 72.0 46 58.7
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 1.5e-10 72.0 260 26.2
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 1.5e-10 72.0 255 25.5
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 4.3e-10 70.5 255 26.7
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 4.3e-10 70.5 255 26.3
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 7.4e-10 69.7 245 24.5
Thecc.02G089200 Theobroma cacao HOM05D000246 ORTHO05D005396 7.4e-10 69.7 253 26.5
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 7.4e-10 69.7 252 25.0
CARHR051950 Cardamine hirsuta HOM05D000246 ORTHO05D005396 9.7e-10 69.3 244 26.2
Potri.003G015800 Populus trichocarpa HOM05D000246 ORTHO05D005396 9.7e-10 69.3 248 25.8
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 9.7e-10 69.3 257 24.5
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 1.6e-09 68.6 242 26.0
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.6e-09 68.6 234 24.8
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 1.6e-09 68.6 243 25.1
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 2.2e-09 68.2 242 26.0
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 2.2e-09 68.2 253 24.1
COL.COLO4_11771 Corchorus olitorius HOM05D000246 ORTHO05D005396 2.8e-09 67.8 253 26.5
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 2.8e-09 67.8 253 26.1
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 2.8e-09 67.8 253 24.1
HPP92_004440 Vanilla planifolia HOM05D000246 ORTHO05D005396 2.8e-09 67.8 239 25.5
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 3.7e-09 67.4 241 26.1
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 3.7e-09 67.4 241 26.1
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 4.8e-09 67.0 252 25.8
Aqoxy5G02652 Aquilegia oxysepala HOM05D000246 ORTHO05D005396 6.3e-09 66.6 241 24.1
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 6.3e-09 66.6 241 25.7
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 6.3e-09 66.6 253 24.9
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 6.3e-09 66.6 255 26.3
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 6.3e-09 66.6 257 25.3
CANSAT11G0299 Cannabis sativa HOM05D000246 ORTHO05D005396 8.2e-09 66.2 240 25.0
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 8.2e-09 66.2 237 26.6
unitig_8.g4526 Utricularia gibba HOM05D000246 ORTHO05D005396 8.2e-09 66.2 243 25.5
Actinidia39024 Actinidia chinensis HOM05D000246 ORTHO05D005396 1.1e-08 65.9 254 24.8
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 1.1e-08 65.9 252 25.8
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.1e-08 65.9 258 23.6
AL2G15560 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 1.4e-08 65.5 243 24.3
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.4e-08 65.5 241 26.1
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 1.4e-08 65.5 252 24.6
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.8e-08 65.1 241 25.3
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 1.8e-08 65.1 248 24.6
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 1.8e-08 65.1 242 25.6
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 2.4e-08 64.7 246 25.2
CSS0044641 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 2.4e-08 64.7 246 25.2
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 2.4e-08 64.7 253 25.7
Glyma.12G170000 Glycine max HOM05D000246 ORTHO05D005396 2.4e-08 64.7 236 25.4
Nitab4.5_0001744g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 2.4e-08 64.7 241 25.3
Sabra03G0009100 Salix brachista HOM05D000246 ORTHO05D005396 2.4e-08 64.7 238 24.4
Sabra03G0009700 Salix brachista HOM05D000246 ORTHO05D005396 2.4e-08 64.7 238 24.4
Zm00001eb231860 Zea mays HOM05D000246 ORTHO05D005396 2.4e-08 64.7 239 26.8
BcaB07g31246 Brassica carinata HOM05D000246 ORTHO05D005396 3.1e-08 64.3 246 24.8
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 3.1e-08 64.3 252 24.6
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 3.1e-08 64.3 254 24.4
Hund06556 Selenicereus undatus HOM05D000246 ORTHO05D005396 3.1e-08 64.3 251 23.9
Cc02_g22770 Coffea canephora HOM05D000246 ORTHO05D005396 4.1e-08 63.9 238 24.8
Thhalv10006602m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 4.1e-08 63.9 245 25.7
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 4.1e-08 63.9 236 25.0
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 4.1e-08 63.9 261 23.4
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 4.1e-08 63.9 242 25.6
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 5.3e-08 63.5 241 24.9
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 5.3e-08 63.5 241 24.9
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 5.3e-08 63.5 241 24.9
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 5.3e-08 63.5 241 24.9
Nitab4.5_0008546g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 5.3e-08 63.5 255 23.9
FAN08G0442 Fragaria x ananassa HOM05D000246 ORTHO05D005396 6.9e-08 63.2 222 26.6
Sabra03G0008800 Salix brachista HOM05D000246 ORTHO05D005396 6.9e-08 63.2 238 24.4
Sabra03G0009400 Salix brachista HOM05D000246 ORTHO05D005396 6.9e-08 63.2 238 24.4
A09p17030 Brassica napus HOM05D000246 ORTHO05D005396 1.2e-07 62.4 246 25.2
BraA09t37338Z Brassica rapa HOM05D000246 ORTHO05D005396 1.2e-07 62.4 246 25.2
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.2e-07 62.4 254 24.4
FAN04G2409 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.5e-07 62.0 242 24.4
FAN18G0190 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.5e-07 62.0 242 24.4
Peaxi162Scf00011g00639 Petunia axillaris HOM05D000246 ORTHO05D005396 1.5e-07 62.0 253 22.9
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 2.6e-07 61.2 253 22.5
FvH4_5g28920 Fragaria vesca HOM05D000246 ORTHO05D005396 2.6e-07 61.2 242 24.4
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 3.4e-07 60.8 254 24.8
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 3.4e-07 60.8 227 24.7
RcHm_v2.0_Chr7g0221231 Rosa chinensis HOM05D000246 ORTHO05D005396 4.5e-07 60.5 247 24.3
CAN.G798.21 Capsicum annuum HOM05D000246 ORTHO05D005396 5.9e-07 60.1 253 23.7
ATR0071G007 Amborella trichopoda HOM05D000246 ORTHO05D005396 1.3e-06 58.9 243 24.7
Oeu032246.1 Olea europaea HOM05D000246 ORTHO05D005396 2.2e-06 58.2 238 23.9
CsaV3_4G012070 Cucumis sativus L. HOM05D000246 ORTHO05D172834 5.0e-06 57.0 75 42.7


User provided reference genes

Program Settings