Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 2.7e-180 635.2 314 100.0
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.3e-166 589.7 299 96.3
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.6e-119 433.3 297 73.7
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 2.1e-116 422.9 282 74.1
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 8.0e-116 421.0 300 69.0
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.0e-115 420.6 299 69.6
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 8.8e-115 417.5 299 68.6
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 1.7e-113 413.3 313 66.5
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 2.8e-113 412.5 298 67.8
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.8e-113 412.5 298 67.8
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 6.3e-113 411.4 288 69.1
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 8.3e-113 411.0 308 68.8
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 8.3e-113 411.0 299 69.9
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 4.1e-112 408.7 302 66.9
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.2e-111 407.1 305 66.2
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 1.6e-111 406.8 255 72.9
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 7.7e-111 404.4 286 70.6
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.3e-110 403.7 298 66.8
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 1.3e-110 403.7 295 68.5
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 1.7e-110 403.3 302 67.5
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.7e-110 403.3 299 68.6
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 5.0e-110 401.7 248 77.0
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 3.2e-109 399.1 297 67.3
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 4.2e-109 398.7 310 66.1
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 2.1e-108 396.4 292 67.8
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.7e-108 396.0 285 66.3
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 3.6e-108 395.6 301 66.4
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 1.0e-107 394.0 288 67.4
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.8e-107 393.3 306 67.6
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 6.8e-107 391.3 273 70.0
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 8.8e-107 391.0 313 63.3
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.5e-106 390.2 281 68.3
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 2.0e-106 389.8 256 72.7
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 2.0e-106 389.8 311 63.3
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.0e-106 389.8 289 67.5
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 3.4e-106 389.0 309 63.4
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 5.7e-106 388.3 302 63.9
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 7.5e-106 387.9 266 70.3
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.3e-105 387.1 298 65.4
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 1.7e-105 386.7 293 67.6
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 3.7e-105 385.6 250 73.6
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 3.7e-105 385.6 261 72.0
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 6.3e-105 384.8 271 69.4
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.1e-104 384.0 299 66.2
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.4e-104 383.6 308 63.3
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 3.1e-104 382.5 274 68.2
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 1.2e-103 380.6 302 62.9
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.6e-103 380.2 294 65.0
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 4.5e-103 378.6 304 63.8
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 2.3e-102 376.3 308 62.7
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 6.6e-102 374.8 297 64.3
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 6.6e-102 374.8 239 74.9
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 8.6e-102 374.4 306 63.4
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.1e-101 374.0 259 69.9
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 1.6e-100 370.2 302 62.6
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.1e-100 369.8 252 67.9
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 4.7e-100 368.6 306 60.5
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 8.0e-100 367.9 306 61.1
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 5.2e-99 365.2 267 67.4
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 5.2e-99 365.2 299 64.9
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.2e-98 364.0 298 60.7
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 2.0e-98 363.2 316 60.1
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 3.4e-98 362.5 295 60.0
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 3.7e-97 359.0 296 60.5
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 3.7e-97 359.0 247 68.0
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 4.9e-97 358.6 303 59.1
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 6.4e-97 358.2 248 69.8
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 6.4e-97 358.2 297 58.6
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 1.4e-96 357.1 299 61.2
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 3.2e-96 355.9 297 60.3
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 3.2e-96 355.9 297 59.9
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 3.2e-96 355.9 297 59.9
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 4.1e-96 355.5 297 60.6
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 4.1e-96 355.5 280 62.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 7.0e-96 354.8 295 59.3
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 9.2e-96 354.4 295 59.0
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 2.0e-95 353.2 294 59.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 2.0e-95 353.2 295 60.0
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 2.7e-95 352.8 295 59.3
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.0e-94 350.9 281 62.6
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 2.3e-94 349.7 247 64.4
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 3.0e-94 349.4 295 59.0
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 1.1e-93 347.4 267 63.7
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.1e-93 347.4 290 61.7
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 1.5e-93 347.1 297 58.9
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.9e-93 346.7 310 60.3
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 1.3e-86 323.9 201 76.1
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.1e-84 316.6 253 60.9
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.1e-84 316.6 253 60.9
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 4.0e-83 312.4 311 53.7
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.5e-82 310.5 308 53.6
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 4.1e-80 302.4 259 58.3
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 6.2e-76 288.5 276 51.4
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 8.1e-76 288.1 253 54.2
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 1.2e-74 284.3 266 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 4.1e-72 275.8 255 53.7
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 2.7e-71 273.1 307 51.5
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.6e-68 263.8 168 76.2
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 3.1e-67 259.6 175 67.4
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.3e-65 254.2 302 49.0
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 2.2e-57 226.9 300 46.0
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.7e-54 217.2 211 56.9
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 4.0e-51 206.1 296 39.9
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 9.9e-50 201.4 384 35.4
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 5.5e-48 195.7 116 78.4
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 2.8e-44 183.3 117 75.2
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 3.1e-43 179.9 191 51.3
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 4.0e-43 179.5 108 76.9
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 5.3e-43 179.1 116 72.4
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 5.7e-29 132.5 95 63.2
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 8.2e-28 128.6 72 83.3
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.9e-16 90.9 267 28.8
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 4.4e-13 79.7 192 29.7
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.7e-13 79.3 43 79.1
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 3.5e-10 70.1 38 73.7
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.0e-09 68.6 134 35.8
PRCOL_00005231 Prasinoderma coloniale HOM05D007129 ORTHO05D008680 4.7e-07 59.7 153 34.6
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 4.0e-06 56.6 58 46.6


User provided reference genes

Program Settings