Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 0.0e+00 1475.3 761 100.0
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 4.1e-291 1004.6 766 67.5
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-290 1003.0 717 69.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.9e-289 998.4 765 68.4
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.1e-288 996.5 787 68.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.2e-288 995.0 793 67.6
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 4.0e-286 988.0 744 65.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.1e-283 979.9 784 64.2
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.8e-283 979.2 755 68.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.8e-283 979.2 761 64.7
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 5.9e-282 974.2 655 71.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 5.9e-282 974.2 655 71.9
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.9e-280 969.1 655 71.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.6e-279 966.1 655 71.5
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 6.1e-279 964.1 655 70.1
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 4.0e-278 961.4 655 69.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.5e-277 959.5 750 64.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.7e-277 957.6 656 71.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 7.5e-277 957.2 655 70.8
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.7e-276 956.1 762 62.7
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.7e-276 956.1 657 70.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 8.3e-276 953.7 664 69.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.4e-275 953.0 655 69.0
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.4e-275 953.0 655 70.1
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.4e-275 952.2 655 68.9
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 9.2e-275 950.3 655 69.0
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.7e-274 948.7 655 68.5
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 7.8e-274 947.2 755 64.0
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.0e-273 946.8 655 68.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.7e-273 946.0 758 62.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 2.9e-273 945.3 657 69.9
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 5.0e-273 944.5 659 69.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 5.0e-273 944.5 655 68.9
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.1e-272 943.3 655 68.5
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.0e-270 936.8 656 68.6
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.4e-270 936.4 775 61.8
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 5.2e-270 934.5 753 62.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 6.8e-270 934.1 657 69.4
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.8e-270 934.1 655 68.9
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.9e-268 928.7 755 66.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 3.7e-268 928.3 655 68.2
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 6.4e-268 927.5 628 71.8
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 8.3e-268 927.2 761 61.6
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.4e-267 925.6 722 62.7
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.4e-267 925.6 655 66.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.3e-265 919.8 656 67.1
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.3e-265 919.1 655 68.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.0e-265 918.7 655 67.2
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 8.6e-265 917.1 733 61.9
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-264 916.4 771 60.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.5e-261 906.4 693 62.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 2.0e-261 906.0 654 65.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.6e-261 905.6 654 65.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 7.5e-261 904.0 607 71.8
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.3e-260 903.3 683 64.7
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 8.3e-260 900.6 779 58.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.3e-257 893.3 734 63.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.5e-256 889.8 657 65.4
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-256 889.0 657 65.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.5e-256 889.0 658 65.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-255 885.9 657 65.3
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-255 885.9 657 65.3
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-255 885.9 657 65.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 4.7e-255 884.8 655 66.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 8.1e-255 884.0 657 65.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.4e-254 883.2 657 65.0
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.4e-254 883.2 655 66.1
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.0e-254 881.7 657 65.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 8.9e-254 880.6 654 64.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.2e-253 880.2 739 61.0
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 3.7e-252 875.2 750 59.7
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.1e-251 873.6 750 59.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 9.2e-251 870.5 778 58.9
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 9.2e-251 870.5 786 59.4
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.7e-250 869.0 778 58.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.7e-250 869.0 583 71.0
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.0e-250 867.8 783 59.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-249 866.7 767 61.9
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.7e-249 866.3 655 63.8
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.1e-249 864.8 627 66.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.9e-248 862.8 787 58.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 2.5e-248 862.4 702 61.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 4.3e-248 861.7 776 59.1
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.4e-246 856.7 611 69.2
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 4.0e-246 855.1 660 64.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 5.2e-246 854.7 654 62.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 6.8e-246 854.4 530 77.0
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 6.8e-246 854.4 660 64.4
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.8e-244 848.6 656 63.6
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 8.4e-244 847.4 657 64.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 6.6e-241 837.8 746 58.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.1e-238 828.9 652 63.5
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-236 823.5 780 55.4
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.9e-235 819.7 669 59.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 7.8e-234 814.3 739 56.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.6e-231 806.6 717 57.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.3e-230 801.6 654 61.6
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.5e-229 800.0 643 61.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 9.3e-227 790.8 629 63.1
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-225 786.9 705 57.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.8e-222 776.5 673 56.2
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.3e-222 775.0 738 55.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 9.0e-222 774.2 657 57.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.5e-221 771.9 782 53.8
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.9e-217 758.8 657 58.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.8e-215 752.7 659 58.7
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.2e-212 743.0 656 57.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.4e-212 741.1 656 55.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 2.7e-210 736.1 656 54.4
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.1e-209 731.9 597 60.3
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-205 719.9 568 64.3
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.4e-205 719.2 679 53.2
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.5e-203 713.0 686 54.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.2e-202 710.7 770 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 7.7e-189 664.8 532 59.2
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-187 661.0 515 63.3
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 2.3e-185 653.3 547 62.0
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.1e-182 642.9 653 52.5
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.7e-181 638.3 754 48.3
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.9e-179 633.6 423 70.4
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.2e-171 605.9 371 77.1
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.2e-171 605.1 549 61.6
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.6e-170 604.0 654 49.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-169 600.5 426 68.3
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 4.8e-167 592.4 427 66.7
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.3e-164 583.6 685 46.4
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-160 570.9 440 62.5
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.2e-159 567.0 424 64.4
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.7e-159 566.2 425 64.0
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.7e-159 566.2 426 64.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.1e-147 528.1 746 40.5
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 8.1e-138 495.4 668 40.1
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.1e-129 466.8 687 38.7
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.4e-128 463.0 413 56.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.3e-124 451.4 423 53.7
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.2e-118 430.3 671 36.7
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.9e-111 407.1 363 56.5
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-100 371.3 478 44.1
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.3e-90 338.6 228 71.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.7e-87 328.2 233 69.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.1e-86 325.5 230 66.1
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 4.6e-85 320.1 221 70.1
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.2e-78 296.2 207 69.1
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.8e-74 284.3 231 60.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.1e-73 280.4 222 62.2
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-72 278.1 222 61.3
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.1e-67 262.3 222 57.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.9e-64 250.0 193 61.7
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.5e-63 246.1 209 58.9
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.5e-59 235.3 174 65.5
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.9e-50 203.8 123 74.8
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 5.4e-49 200.3 189 52.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.1e-45 188.3 141 65.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 7.8e-40 169.9 84 90.5
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 4.4e-35 154.1 150 53.3
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.9e-34 151.4 148 52.0
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-26 125.6 91 68.1
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.2e-26 125.2 137 46.7
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.1e-25 122.9 75 76.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.7e-24 118.2 117 50.4
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.9e-23 114.4 71 73.2
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 2.5e-22 111.7 129 46.5
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.2e-21 109.4 147 41.5
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-20 105.5 59 78.0
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.6e-13 82.4 50 70.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 3.4e-11 74.7 51 64.7
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.4e-09 68.6 44 68.2
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.2e-08 66.2 44 65.9
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 3.9e-07 61.2 262 25.6
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 3.3e-06 58.2 81 39.5
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 7.3e-06 57.0 267 24.7
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 9.6e-06 56.6 256 23.0


User provided reference genes

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