Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 0.0e+00 1474.9 757 100.0
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 0.0e+00 1342.0 758 91.4
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 0.0e+00 1312.4 759 88.8
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 0.0e+00 1135.6 734 80.5
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 7.2e-272 940.6 756 63.9
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 3.6e-271 938.3 756 63.8
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 1.3e-268 929.9 753 63.1
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 5.7e-253 877.9 917 54.1
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.2e-247 860.1 753 59.2
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.1e-246 855.5 766 57.8
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 3.4e-245 852.0 753 58.4
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 4.4e-245 851.7 758 59.2
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 2.3e-238 829.3 734 59.1
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 5.8e-237 824.7 726 58.5
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 1.7e-236 823.2 796 55.2
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 2.2e-236 822.8 688 61.0
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.3e-233 813.5 742 57.8
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.3e-233 813.5 706 59.2
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.1e-232 810.4 1118 44.5
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 1.5e-232 810.1 720 56.8
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 2.5e-232 809.3 761 56.2
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 8.1e-231 804.3 781 56.0
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.3e-228 797.0 727 57.5
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 3.8e-228 795.4 761 55.3
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 3.8e-228 795.4 750 56.8
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 5.4e-227 791.6 722 56.9
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.3e-225 786.9 729 56.7
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.7e-225 786.6 761 55.2
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 8.6e-225 784.3 714 57.4
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 8.6e-225 784.3 760 55.7
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.5e-224 783.5 718 57.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 4.3e-224 781.9 730 56.4
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 5.6e-224 781.6 748 53.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 7.3e-224 781.2 766 54.2
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 2.1e-223 779.6 773 53.3
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 6.2e-223 778.1 715 57.3
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.1e-222 777.3 783 53.4
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.4e-222 776.9 741 55.2
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.2e-222 775.0 761 54.1
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 5.2e-222 775.0 709 56.6
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.4e-221 772.3 750 53.5
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 9.9e-221 770.8 655 59.2
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.4e-219 766.9 788 53.2
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 4.2e-219 765.4 726 55.2
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 3.5e-218 762.3 709 55.9
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.7e-217 760.0 753 53.9
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 2.5e-216 756.1 758 53.3
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.3e-215 753.8 721 54.6
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.6e-215 753.4 763 53.5
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 2.1e-215 753.1 760 53.0
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.6e-215 752.3 699 55.9
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 4.8e-215 751.9 730 54.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.1e-214 750.7 760 52.5
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.8e-214 750.0 698 56.0
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.3e-212 743.8 721 54.2
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 2.2e-212 743.0 760 52.8
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.1e-211 740.7 689 57.2
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 2.4e-211 739.6 779 53.1
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 9.3e-211 737.6 686 55.4
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 2.1e-210 736.5 734 53.5
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 2.7e-210 736.1 731 53.6
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 2.3e-209 733.0 708 55.2
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 5.1e-209 731.9 746 52.5
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 6.7e-209 731.5 715 55.7
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 2.5e-208 729.6 721 53.8
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 1.3e-207 727.2 769 51.1
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 2.8e-207 726.1 671 55.9
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 1.4e-203 713.8 685 54.7
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.2e-203 712.6 760 52.0
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 7.9e-202 708.0 744 50.9
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 7.9e-202 708.0 691 53.7
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.3e-201 707.2 704 51.6
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 9.6e-200 701.0 731 49.8
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.1e-199 699.9 730 51.9
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 2.8e-199 699.5 733 49.8
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 3.7e-199 699.1 725 50.3
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 6.2e-199 698.4 733 49.8
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.8e-198 696.8 727 50.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.8e-198 696.8 706 53.0
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 3.4e-197 692.6 683 54.2
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.8e-196 689.1 734 49.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 4.9e-196 688.7 757 49.9
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.4e-195 687.2 757 49.8
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 5.5e-195 685.3 773 49.4
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 6.0e-194 681.8 724 50.1
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 7.9e-194 681.4 762 49.5
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.3e-192 676.0 606 56.8
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.1e-190 671.0 719 52.0
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.4e-190 669.8 618 55.7
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.5e-184 649.8 735 49.5
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 3.7e-183 646.0 713 49.9
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 6.5e-180 635.2 754 48.1
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.2e-172 610.1 710 47.9
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.6e-165 587.4 633 51.0
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.6e-162 577.4 681 48.6
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 4.7e-154 549.3 682 46.0
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 2.3e-153 547.0 770 42.2
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-144 517.7 679 45.7
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.7e-141 506.9 471 54.6
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 4.4e-120 436.4 754 38.5
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-117 428.3 401 56.1
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 8.6e-116 422.2 392 56.9
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 1.3e-100 371.7 326 58.9
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 1.3e-98 365.2 645 35.3
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 2.4e-97 360.9 594 35.9
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 2.4e-94 350.9 623 34.7
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 3.8e-87 327.0 703 34.1
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.0e-80 304.7 571 32.9
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 7.9e-77 292.7 263 58.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.3e-76 292.0 405 43.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.3e-75 287.0 681 33.0
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 7.0e-57 226.5 619 29.4
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.8e-47 194.1 284 41.9
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.0e-44 186.0 633 26.5
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.7e-39 168.7 683 23.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 1.7e-39 168.7 664 27.0
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 1.0e-31 142.9 163 50.3
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.4e-28 132.5 161 44.1
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.6e-27 128.3 220 37.7
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 8.3e-26 123.2 463 25.1
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.1e-25 122.9 121 52.9
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 5.4e-25 120.6 155 44.5
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.5e-24 117.9 162 45.1
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.6e-21 109.0 84 63.1
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 3.0e-15 88.2 74 59.5
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 8.6e-15 86.7 92 50.0
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 3.1e-12 78.2 152 35.5
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 5.2e-12 77.4 189 31.2
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.1e-09 69.7 65 50.8
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 5.4e-09 67.4 257 26.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-08 65.5 49 53.1
AT1G22240 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 3.9e-07 61.2 262 26.3
AL1G35692 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 2.5e-06 58.5 262 26.0
Sed0024521 Sechium edule HOM05D000867 ORTHO05D000864 9.5e-06 56.6 291 21.6


User provided reference genes

Program Settings