Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046580 Cucumis sativus L. HOM05D003261 ORTHO05D004230 1.8e-37 158.7 75 100.0
MELO3C007855.2 Cucumis melo HOM05D003261 ORTHO05D004230 6.5e-24 113.6 61 85.2
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.4e-23 112.5 60 81.7
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.4e-23 112.5 60 81.7
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 1.4e-23 112.5 59 84.7
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 1.4e-23 112.5 60 81.7
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 2.5e-23 111.7 59 83.1
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.5e-23 111.7 60 80.0
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.5e-23 111.7 60 80.0
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 2.5e-23 111.7 60 80.0
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 3.2e-23 111.3 60 80.0
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 3.2e-23 111.3 60 81.7
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 3.2e-23 111.3 60 80.0
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 5.5e-23 110.5 60 80.0
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 5.5e-23 110.5 60 80.0
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 5.5e-23 110.5 60 80.0
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 5.5e-23 110.5 60 80.0
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 7.2e-23 110.2 60 81.7
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 9.4e-23 109.8 59 79.7
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 9.4e-23 109.8 59 78.0
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 9.4e-23 109.8 60 78.3
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 9.4e-23 109.8 60 80.0
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 9.4e-23 109.8 60 80.0
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 9.4e-23 109.8 60 78.3
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 9.4e-23 109.8 60 78.3
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 1.2e-22 109.4 59 81.4
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-22 109.4 60 78.3
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 1.6e-22 109.0 60 76.7
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 78.3
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 75.0
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 75.0
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 78.3
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 76.7
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.1e-22 108.6 59 79.7
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.1e-22 108.6 60 78.3
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 2.1e-22 108.6 59 79.7
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 2.7e-22 108.2 60 76.7
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 2.7e-22 108.2 60 78.3
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 2.7e-22 108.2 59 76.3
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 2.7e-22 108.2 59 76.3
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.6e-22 107.8 60 76.7
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 3.6e-22 107.8 59 78.0
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 3.6e-22 107.8 60 76.7
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 3.6e-22 107.8 60 76.7
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 3.6e-22 107.8 60 76.7
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 4.7e-22 107.5 60 75.0
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 4.7e-22 107.5 60 73.3
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 4.7e-22 107.5 60 76.7
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 4.7e-22 107.5 59 76.3
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 4.7e-22 107.5 60 75.0
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 76.3
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 6.1e-22 107.1 60 76.7
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 6.1e-22 107.1 60 76.7
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 6.1e-22 107.1 60 73.3
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 6.1e-22 107.1 60 73.3
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 74.6
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 76.3
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 74.6
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 74.6
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 74.6
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 76.3
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 6.1e-22 107.1 59 76.3
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 8.0e-22 106.7 60 73.3
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 8.0e-22 106.7 60 73.3
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 8.0e-22 106.7 60 76.7
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 8.0e-22 106.7 59 78.0
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 1.0e-21 106.3 60 75.0
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.0e-21 106.3 60 76.7
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 1.0e-21 106.3 60 76.7
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 1.0e-21 106.3 60 75.0
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 75.0
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 1.4e-21 105.9 59 72.9
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 75.0
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 71.7
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 71.7
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 75.0
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.4e-21 105.9 59 74.6
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.4e-21 105.9 60 75.0
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 75.0
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 73.3
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 73.3
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 73.3
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.8e-21 105.5 59 78.0
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 73.3
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.8e-21 105.5 60 71.7
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 2.3e-21 105.1 59 74.6
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 2.3e-21 105.1 60 73.3
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.0e-21 104.8 60 75.0
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 3.9e-21 104.4 60 75.0
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 3.9e-21 104.4 59 74.6
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 3.9e-21 104.4 59 74.6
TPR.G39909 Trifolium pratense HOM05D003261 ORTHO05D004230 3.9e-21 104.4 59 74.6
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 5.2e-21 104.0 60 71.7
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 5.2e-21 104.0 59 78.0
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 5.2e-21 104.0 57 75.4
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 6.7e-21 103.6 59 74.6
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 6.7e-21 103.6 59 78.0
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 8.8e-21 103.2 60 75.0
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 2.6e-20 101.7 64 67.2
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 3.3e-20 101.3 59 74.6
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 3.3e-20 101.3 60 68.3
CiPaw.14G132800 Carya illinoinensis HOM05D003261 ORTHO05D004230 4.4e-20 100.9 56 78.6
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.4e-20 100.9 60 71.7
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
CiPaw.06G074500 Carya illinoinensis HOM05D003261 ORTHO05D004230 5.7e-20 100.5 56 78.6
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 5.7e-20 100.5 59 72.9
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 5.7e-20 100.5 60 70.0
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 5.7e-20 100.5 64 67.2
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 5.7e-20 100.5 60 73.3
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 7.4e-20 100.1 59 72.9
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 7.4e-20 100.1 59 72.9
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 7.4e-20 100.1 59 72.9
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 7.4e-20 100.1 59 72.9
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 7.4e-20 100.1 59 72.9
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 7.4e-20 100.1 60 71.7
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 7.4e-20 100.1 60 71.7
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 9.7e-20 99.8 60 68.3
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 1.3e-19 99.4 59 71.2
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.3e-19 99.4 60 71.7
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.3e-19 99.4 59 71.2
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 1.3e-19 99.4 59 72.9
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 1.3e-19 99.4 59 72.9
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.3e-19 99.4 59 72.9
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.7e-19 99.0 59 69.5
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.7e-19 99.0 59 72.9
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.7e-19 99.0 59 69.5
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 2.2e-19 98.6 59 69.5
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.8e-19 98.2 59 69.5
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 2.8e-19 98.2 59 71.2
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 2.8e-19 98.2 59 69.5
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 2.8e-19 98.2 60 68.3
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 4.8e-19 97.4 59 71.2
Peaxi162Scf00858g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 4.8e-19 97.4 59 67.8
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 1.1e-18 96.3 55 72.7
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.4e-18 95.9 59 69.5
Aqoxy7G03551 Aquilegia oxysepala HOM05D003261 ORTHO05D014021 1.8e-18 95.5 55 74.5
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 4.1e-18 94.4 59 67.8
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 7.0e-18 93.6 60 73.3
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 9.1e-18 93.2 66 63.6
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-17 92.8 59 66.1
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.6e-17 91.7 88 50.0
RcHm_v2.0_Chr4g0429821 Rosa chinensis HOM05D003261 ORTHO05D004230 1.7e-16 89.0 60 63.3
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 1.7e-16 89.0 61 60.7
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 6.5e-16 87.0 59 66.1
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 3.2e-15 84.7 66 47.0
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 1.2e-14 82.8 57 59.6
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 3.6e-14 81.3 59 59.3
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 1.0e-13 79.7 59 54.2
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.8e-13 79.0 49 67.3
Sopen09g005330 Solanum pennellii HOM05D003261 ORTHO05D014021 1.5e-12 75.9 58 58.6
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 2.6e-12 75.1 48 64.6
Aqoxy5G03295 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.4e-12 74.7 71 47.9
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 4.4e-12 74.3 59 55.9
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 5.7e-12 73.9 49 65.3
Nitab4.5_0002089g0060 Nicotiana tabacum HOM05D003261 ORTHO05D014021 6.3e-11 70.5 42 66.7
Migut.E01441 Erythranthe guttata HOM05D003261 ORTHO05D004230 6.5e-08 60.5 42 54.8
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.1e-07 59.7 35 80.0
BcaC09g50284 Brassica carinata HOM05D003261 ORTHO05D004230 2.5e-07 58.5 42 61.9
C01p26990 Brassica napus HOM05D003261 ORTHO05D004230 2.5e-07 58.5 42 61.9
BolC1t02648H Brassica oleracea HOM05D003261 ORTHO05D004230 2.5e-07 58.5 42 61.9
BraA01t02073Z Brassica rapa HOM05D003261 ORTHO05D004230 2.1e-06 55.5 38 68.4


User provided reference genes

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