Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 0.0e+00 1926.0 975 100.0
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 0.0e+00 1654.8 934 91.2
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 0.0e+00 1606.3 976 85.5
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 0.0e+00 1515.0 981 79.6
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.6e-293 1010.4 999 57.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 1.6e-292 1009.6 991 56.6
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 4.9e-289 998.0 992 56.7
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 4.8e-284 981.5 1055 54.3
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 2.0e-274 949.5 1000 55.1
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 9.6e-269 930.6 988 54.7
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 5.8e-266 921.4 953 55.3
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 5.7e-261 904.8 999 53.5
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.9e-259 897.9 906 54.5
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.4e-258 895.6 862 57.7
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 3.8e-257 892.1 1009 52.4
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 8.5e-257 891.0 869 55.7
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 8.5e-257 891.0 998 52.3
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 7.2e-256 887.9 949 53.2
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.0e-254 884.0 993 51.9
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.3e-254 883.6 973 52.6
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 6.7e-254 881.3 865 57.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 9.7e-253 877.5 868 57.4
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 4.8e-252 875.2 1010 51.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 2.0e-250 869.8 984 52.1
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 3.4e-250 869.0 991 51.0
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 5.9e-250 868.2 979 51.4
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.3e-249 867.1 1001 50.4
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 1.7e-249 866.7 959 51.6
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.8e-249 865.5 1006 51.2
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.8e-249 865.5 971 51.0
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 8.5e-249 864.4 952 51.5
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 4.6e-247 858.6 973 52.0
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 6.1e-247 858.2 998 50.3
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 7.9e-247 857.8 951 52.7
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 7.9e-247 857.8 976 52.0
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.0e-246 857.4 996 50.3
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.5e-245 853.6 1014 50.8
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 4.4e-245 852.0 992 49.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.4e-243 847.0 990 50.6
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.3e-243 845.1 987 51.3
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.9e-241 839.3 951 50.4
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.9e-241 839.3 994 48.6
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 3.2e-240 835.9 1011 50.0
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 2.1e-239 833.2 973 51.0
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.2e-238 828.6 986 49.6
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.0e-237 826.6 996 48.5
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 2.0e-237 826.6 1000 48.2
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 9.7e-237 824.3 960 50.6
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 2.2e-236 823.2 1001 48.4
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 3.7e-236 822.4 988 50.1
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 8.2e-236 821.2 993 49.9
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 4.1e-235 818.9 950 50.7
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 3.5e-234 815.8 998 49.5
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 5.5e-232 808.5 883 51.1
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.7e-231 806.2 911 49.4
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 4.7e-231 805.4 918 50.9
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 2.3e-230 803.1 1004 48.6
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.2e-229 800.8 867 52.4
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.6e-229 799.7 966 48.1
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 2.0e-226 790.0 972 49.0
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.2e-225 786.6 968 47.8
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.1e-224 784.3 958 47.9
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.9e-224 783.5 909 50.3
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 4.2e-224 782.3 982 48.5
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 5.5e-224 781.9 1001 46.9
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 2.8e-220 769.6 981 47.1
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.1e-219 766.1 867 50.1
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.5e-218 762.7 744 55.9
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.5e-216 757.3 921 47.8
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 7.2e-216 755.0 948 45.9
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 8.0e-215 751.5 954 45.7
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 6.8e-214 748.4 906 48.3
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 3.1e-211 739.6 954 46.3
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.3e-209 734.2 961 46.0
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.7e-209 733.8 963 45.4
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.8e-207 726.5 957 45.7
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 3.6e-207 726.1 877 48.5
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 6.1e-207 725.3 908 47.7
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.0e-206 724.5 718 54.9
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.5e-205 720.7 966 45.2
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 9.8e-205 718.0 953 44.8
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 6.4e-204 715.3 1005 44.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.1e-203 712.6 980 44.5
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.3e-201 706.8 956 45.2
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 7.3e-200 701.8 884 46.7
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.6e-199 700.7 956 44.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.3e-198 696.8 868 47.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 6.8e-198 695.3 964 44.2
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 7.5e-197 691.8 998 43.4
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.9e-195 687.2 884 45.6
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.3e-193 681.0 884 44.9
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.2e-191 674.5 734 52.3
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.3e-188 664.5 1007 42.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 2.4e-187 660.2 1010 42.7
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 3.3e-184 649.8 706 51.6
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 5.1e-177 625.9 918 42.6
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 8.6e-177 625.2 606 56.8
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 7.3e-176 622.1 871 44.4
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 2.4e-171 607.1 622 54.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.3e-169 601.3 716 49.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.2e-155 553.5 723 47.2
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.5e-147 527.3 954 38.1
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.8e-143 513.1 960 37.0
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.5e-141 508.1 1076 34.6
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.6e-141 507.3 941 36.1
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.8e-132 476.9 495 53.7
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 8.5e-132 475.7 826 38.3
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 3.7e-111 407.1 1043 31.5
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.6e-93 348.6 429 47.6
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 8.9e-65 253.1 939 26.5
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.1e-50 205.3 543 29.7
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.8e-41 175.6 419 28.9
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.0e-41 174.5 287 41.5
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 6.0e-37 160.6 252 35.7
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 3.9e-28 131.3 98 62.2
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 3.7e-26 124.8 292 30.5
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.0e-25 120.2 250 29.2
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.7e-19 100.9 204 28.4
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.7e-18 99.4 196 35.2
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.8e-18 97.8 183 41.5
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.9e-15 88.6 85 55.3
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 7.9e-13 80.5 110 45.5
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 2.5e-06 58.9 110 34.5


User provided reference genes

Program Settings