Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2907.1 1491 100.0
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2818.1 1490 96.9
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2772.7 1481 95.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2667.5 1491 91.4
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2302.3 1491 77.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2260.0 1492 76.1
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2241.8 1497 75.4
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2225.3 1497 75.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2218.4 1491 74.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2218.4 1500 74.3
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2217.2 1500 74.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2214.5 1498 75.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2211.4 1497 74.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2211.0 1496 74.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2202.2 1492 74.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2195.2 1492 74.1
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2193.3 1493 74.0
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2192.2 1497 73.8
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2190.6 1497 74.2
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2190.6 1492 73.8
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2189.5 1483 74.2
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2189.1 1498 73.4
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2186.4 1492 74.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2185.2 1492 74.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2184.5 1497 73.7
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2184.1 1493 73.5
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2182.5 1493 74.1
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2181.8 1492 74.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1492 73.9
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2177.1 1493 73.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2168.3 1494 73.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2165.6 1492 73.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2164.4 1492 73.3
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2161.0 1493 73.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2160.2 1500 72.8
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2157.9 1501 73.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2156.3 1492 73.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2153.6 1498 73.1
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2152.5 1492 72.7
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2151.7 1483 73.4
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2142.9 1499 72.9
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2142.5 1492 72.5
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1483 72.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1534 71.2
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2117.4 1481 73.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2099.7 1554 69.6
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2084.3 1453 73.0
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2081.6 1497 71.1
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1486 70.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2078.1 1498 70.4
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2061.6 1486 70.4
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2059.3 1495 70.3
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2057.7 1496 70.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2055.0 1569 67.7
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2054.3 1497 70.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2047.3 1491 70.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2045.4 1532 69.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1496 69.1
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2039.6 1495 69.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2036.9 1487 70.0
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2033.5 1495 69.2
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2027.3 1492 69.9
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1491 69.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1489 69.4
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2019.6 1491 69.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1487 69.3
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1488 69.6
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2014.6 1487 69.7
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2009.6 1497 69.3
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2009.6 1496 69.3
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2009.2 1487 69.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2006.5 1497 69.2
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2006.1 1498 69.0
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2003.8 1495 68.8
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2003.4 1499 68.9
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1495 69.0
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2001.1 1500 68.9
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2000.7 1485 69.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1995.7 1554 67.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1992.2 1498 67.7
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1989.5 1483 68.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1986.8 1497 68.5
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1986.8 1481 69.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1981.1 1493 68.3
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1966.4 1494 67.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1958.0 1499 67.2
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1949.1 1493 66.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1939.1 1301 75.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1939.1 1575 65.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1937.2 1493 66.5
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1931.4 1461 68.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1906.0 1477 66.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1894.4 1590 64.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1885.2 1305 73.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1882.5 1308 73.3
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1864.0 1502 64.9
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1827.4 1277 72.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1774.2 1482 60.8
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1766.1 1481 61.4
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1761.9 1367 67.2
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1756.9 1393 67.8
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1742.6 1225 73.6
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1742.2 1302 68.4
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1725.7 1435 61.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1667.5 1426 61.9
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1666.4 1443 61.5
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1544.3 1516 54.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1512.7 988 76.3
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1506.1 1534 52.7
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1414.1 1416 55.9
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1394.8 1086 67.7
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1351.7 1209 58.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1280.8 1372 52.8
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1269.2 1298 53.4
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1236.9 1372 51.5
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1075.1 739 75.0
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 4.8e-304 1048.5 1283 49.5
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 6.8e-298 1028.1 746 69.6
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.4e-287 993.8 849 59.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 7.9e-246 855.1 780 59.9
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.5e-233 814.3 923 51.2
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.0e-233 813.9 714 61.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.9e-215 754.2 579 64.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.9e-200 703.7 610 60.5
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.6e-196 690.6 598 60.9
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 4.4e-188 663.3 892 44.3
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.9e-171 606.7 370 78.4
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.6e-161 575.1 741 45.2
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.7e-161 574.3 442 69.2
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.5e-159 567.8 481 65.1
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.6e-150 538.5 469 59.5
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.7e-136 491.9 581 50.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.9e-115 421.4 775 37.3
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 4.1e-101 374.4 1745 25.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 4.2e-90 337.8 1571 26.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 2.6e-87 328.6 218 74.8
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.4e-87 327.8 350 54.0
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.6e-84 319.3 1622 25.0
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.5e-83 313.9 445 42.5
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.2e-72 277.7 224 61.2
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.1e-69 268.1 230 60.9
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 6.6e-67 260.8 155 77.4
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.9e-66 259.2 246 56.5
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 6.8e-64 250.8 152 75.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.9e-59 235.0 273 50.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 3.3e-58 231.9 195 57.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 6.2e-49 201.1 1338 23.2
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.9e-46 192.2 102 87.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.9e-42 179.5 190 51.6
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 9.9e-39 167.2 155 55.5
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.9e-38 165.6 183 49.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.2e-37 162.2 218 49.5
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 5.6e-34 151.4 129 59.7
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.8e-33 149.1 343 34.1
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.1e-28 132.9 109 62.4
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.1e-26 127.1 121 52.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.3e-26 125.6 67 91.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 7.3e-26 124.4 91 68.1
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 8.1e-25 120.9 55 98.2
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.5e-23 116.7 101 62.4
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.8e-22 112.1 57 87.7
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-15 90.5 70 62.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-15 88.6 112 50.9
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.4e-14 84.7 134 38.8
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.8e-11 76.6 53 64.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.8e-11 76.6 53 64.2
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.2e-07 63.9 35 77.1
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 2.6e-07 62.8 40 77.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 3.8e-06 58.9 148 29.7


User provided reference genes

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