Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 1.4e-251 872.5 424 100.0
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 1.1e-245 852.8 424 97.9
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 1.8e-240 835.5 425 95.3
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 6.1e-228 793.9 424 90.3
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 1.1e-213 746.5 424 82.1
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 4.3e-213 744.6 424 82.3
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 6.8e-211 737.3 431 81.2
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 4.3e-205 718.0 425 80.9
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.8e-204 715.3 424 79.5
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 1.4e-203 713.0 424 79.5
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 1.8e-203 712.6 425 80.2
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 2.0e-202 709.1 424 78.5
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.6e-202 708.8 424 79.0
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 3.4e-202 708.4 424 78.5
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 1.1e-200 703.4 420 79.5
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 2.4e-200 702.2 425 79.5
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 4.1e-200 701.4 424 79.0
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 7.0e-200 700.7 425 78.6
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 9.2e-200 700.3 426 78.2
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 1.6e-199 699.5 425 78.1
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 1.0e-198 696.8 425 78.1
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 1.0e-198 696.8 424 76.9
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 3.9e-198 694.9 422 77.7
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 6.6e-198 694.1 425 76.7
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 1.1e-197 693.3 419 79.2
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 1.9e-197 692.6 417 76.7
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 1.9e-197 692.6 424 77.1
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 3.3e-197 691.8 424 77.6
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 5.6e-197 691.0 418 78.9
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 2.8e-196 688.7 420 80.0
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 3.6e-196 688.3 423 77.3
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 8.1e-196 687.2 418 77.8
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 1.4e-195 686.4 426 77.0
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 1.8e-195 686.0 422 78.0
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 3.1e-195 685.3 411 77.9
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 5.2e-195 684.5 415 78.1
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 2.6e-194 682.2 424 75.7
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 3.4e-194 681.8 415 76.6
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 5.8e-194 681.0 414 78.3
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 7.5e-194 680.6 416 77.9
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 7.5e-194 680.6 420 78.6
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 9.9e-194 680.2 425 76.0
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 9.9e-194 680.2 421 76.2
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 3.7e-193 678.3 425 75.8
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 8.3e-193 677.2 415 76.9
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 8.3e-193 677.2 415 76.9
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.1e-192 676.8 425 75.8
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 1.9e-192 676.0 398 78.9
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 3.5e-191 671.8 424 75.0
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 7.8e-191 670.6 424 76.7
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 1.0e-190 670.2 427 75.2
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 3.0e-190 668.7 415 76.9
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 3.9e-190 668.3 416 75.7
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 3.9e-190 668.3 416 75.7
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 3.9e-190 668.3 416 75.5
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 5.1e-190 667.9 418 76.6
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 1.5e-189 666.4 416 75.5
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 1.5e-189 666.4 416 75.5
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 1.9e-189 666.0 416 75.5
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 1.9e-189 666.0 424 74.1
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 2.5e-189 665.6 416 76.0
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 4.3e-189 664.8 424 73.8
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 9.5e-189 663.7 416 76.9
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 9.5e-189 663.7 416 75.5
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 1.2e-188 663.3 416 76.2
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 2.8e-188 662.1 424 73.6
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 3.6e-188 661.8 415 74.7
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 3.6e-188 661.8 421 75.3
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 1.4e-187 659.8 391 78.5
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 1.4e-187 659.8 391 79.0
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 4.0e-187 658.3 415 75.4
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 5.2e-187 657.9 421 75.8
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 6.8e-187 657.5 412 75.7
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 6.8e-187 657.5 421 76.0
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 1.2e-186 656.8 416 75.0
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 2.0e-186 656.0 425 73.9
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 3.4e-186 655.2 416 75.7
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 6.4e-185 651.0 410 76.3
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 8.4e-185 650.6 421 74.8
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 2.4e-184 649.0 416 74.0
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 1.9e-181 639.4 390 77.2
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.6e-180 636.3 444 71.2
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 7.8e-175 617.5 391 74.7
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 1.0e-174 617.1 391 74.2
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 2.3e-174 615.9 429 69.5
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 9.6e-173 610.5 373 78.3
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 2.8e-172 609.0 375 77.9
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 2.2e-169 599.4 366 78.1
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 2.9e-169 599.0 371 78.7
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 8.4e-169 597.4 360 76.7
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 4.6e-167 591.7 351 77.8
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 7.9e-167 590.9 353 79.0
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 3.3e-165 585.5 412 66.5
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 1.1e-155 553.9 342 75.7
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 1.4e-155 553.5 335 77.0
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 3.4e-154 548.9 325 77.5
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 3.2e-152 542.3 403 60.5
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 9.3e-152 540.8 325 76.9
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 1.8e-150 536.6 319 76.8
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 1.5e-149 533.5 319 75.9
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 4.3e-149 531.9 398 61.3
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 1.6e-148 530.0 346 70.2
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 7.6e-146 521.2 411 60.3
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 1.9e-144 516.5 401 59.1
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 4.2e-144 515.4 327 72.5
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 3.6e-143 512.3 408 65.4
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 1.1e-139 500.7 284 80.3
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 6.5e-129 464.9 267 78.7
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 6.1e-127 458.4 291 74.9
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.7e-108 397.1 432 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 1.4e-102 377.5 273 61.5
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 6.3e-100 368.6 246 74.4
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 1.2e-98 364.4 246 69.5
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 7.3e-96 355.1 428 43.7
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 6.8e-94 348.6 312 57.4
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 6.0e-82 308.9 200 72.5
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 3.6e-79 299.7 393 38.9
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.7e-73 280.8 440 36.8
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 2.3e-65 253.8 366 39.3
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 8.4e-60 235.3 322 41.9
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 9.7e-32 142.1 98 64.3
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 8.5e-28 129.0 92 69.6
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 8.2e-23 112.5 92 68.5
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 1.1e-22 112.1 74 67.6
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 4.1e-22 110.2 134 45.5
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 8.8e-17 92.4 50 72.0
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 7.7e-13 79.3 88 48.9
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 1.0e-12 79.0 61 59.0
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 1.5e-11 75.1 57 68.4


User provided reference genes

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