Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.9e-69 266.2 154 100.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 7.5e-66 254.2 167 91.0
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.5e-63 245.0 170 87.6
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 3.0e-59 232.3 163 82.2
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.1e-56 221.9 139 87.8
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 5.4e-56 221.5 167 82.6
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 9.2e-56 220.7 150 84.7
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.0e-55 219.5 168 83.3
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.0e-55 219.5 164 85.4
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.7e-55 219.2 139 85.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.7e-55 219.2 139 85.6
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 3.5e-55 218.8 136 87.5
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.5e-55 218.8 139 85.6
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.5e-55 218.8 139 85.6
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.6e-55 218.4 168 81.0
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.6e-55 218.4 167 82.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.6e-55 218.4 172 79.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.8e-55 217.6 139 84.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 7.8e-55 217.6 141 85.8
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 7.8e-55 217.6 159 79.2
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.0e-54 217.2 168 78.6
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-54 216.9 139 84.9
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.3e-54 216.9 160 79.4
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.7e-54 216.5 163 77.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-54 216.5 163 77.9
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-54 216.5 163 77.9
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.7e-54 216.5 159 77.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.7e-54 216.5 144 83.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 3.0e-54 215.7 165 83.6
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.9e-54 215.3 143 83.2
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 3.9e-54 215.3 163 82.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 5.0e-54 214.9 148 80.4
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 5.0e-54 214.9 146 83.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 5.0e-54 214.9 146 83.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 6.6e-54 214.5 167 77.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 8.6e-54 214.2 164 83.5
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 8.6e-54 214.2 163 77.3
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 8.6e-54 214.2 176 75.6
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.5e-53 213.4 145 82.1
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.5e-53 213.4 146 82.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.5e-53 213.4 149 79.9
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.9e-53 213.0 150 80.0
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.9e-53 213.0 154 77.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.5e-53 212.6 153 76.5
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.5e-53 212.6 179 73.7
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 3.3e-53 212.2 168 79.2
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.3e-53 211.8 142 81.7
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 4.3e-53 211.8 169 81.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.3e-53 211.8 168 78.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.3e-53 211.1 134 85.8
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 7.3e-53 211.1 182 75.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 7.3e-53 211.1 144 75.7
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 7.3e-53 211.1 147 82.3
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 9.5e-53 210.7 171 80.7
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 9.5e-53 210.7 171 80.7
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 9.5e-53 210.7 172 79.7
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 9.5e-53 210.7 150 80.7
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-52 210.3 164 82.9
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.2e-52 210.3 147 80.3
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.2e-52 210.3 178 74.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.6e-52 209.9 160 72.5
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.1e-52 209.5 170 78.2
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.6e-52 208.8 153 79.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.7e-52 208.4 157 74.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.7e-52 208.4 172 79.1
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 4.7e-52 208.4 176 76.7
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.7e-52 208.4 148 79.7
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 6.2e-52 208.0 145 80.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 8.0e-52 207.6 154 77.3
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 8.0e-52 207.6 150 76.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.0e-51 207.2 146 78.8
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-51 207.2 151 80.1
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-51 207.2 140 81.4
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-51 207.2 144 83.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.4e-51 206.8 164 75.0
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.4e-51 206.8 160 73.1
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.4e-51 206.8 139 77.7
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.8e-51 206.5 145 77.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.8e-51 206.5 176 73.9
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.3e-51 206.1 152 77.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.3e-51 206.1 148 80.4
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.1e-51 205.7 171 73.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 3.1e-51 205.7 150 75.3
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 3.1e-51 205.7 150 75.3
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.1e-51 205.7 142 81.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 4.0e-51 205.3 150 76.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.2e-51 204.9 169 78.1
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 6.8e-51 204.5 146 76.0
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.8e-51 204.5 168 75.6
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.8e-51 204.5 168 75.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 8.9e-51 204.1 150 78.0
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-50 203.8 151 74.8
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.2e-50 203.8 156 76.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.2e-50 203.8 147 72.8
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.5e-50 203.4 141 81.6
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-50 203.4 167 72.5
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.0e-50 203.0 185 69.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.6e-50 202.6 139 82.0
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 2.6e-50 202.6 168 78.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 4.4e-50 201.8 169 76.9
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.8e-50 201.4 168 74.4
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 7.5e-50 201.1 165 72.7
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 7.5e-50 201.1 165 72.7
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 9.8e-50 200.7 176 76.1
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 9.8e-50 200.7 174 71.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.9e-49 199.1 172 73.3
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.9e-49 199.1 148 77.0
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.9e-49 199.1 145 77.2
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 6.4e-49 198.0 157 75.2
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 8.3e-49 197.6 165 72.1
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.1e-48 197.2 162 73.5
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.4e-48 196.8 144 77.1
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.9e-48 196.4 149 73.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.4e-48 196.1 172 72.7
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.4e-48 196.1 172 72.7
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.4e-48 196.1 172 72.7
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 2.4e-48 196.1 105 87.6
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-48 195.3 169 71.6
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.1e-48 195.3 139 81.3
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 4.1e-48 195.3 139 81.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 5.4e-48 194.9 162 72.2
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 7.0e-48 194.5 139 80.6
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.0e-48 194.5 166 74.1
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 2.0e-47 193.0 159 72.3
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.7e-47 192.6 179 72.1
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.6e-47 191.8 143 76.9
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 4.6e-47 191.8 141 77.3
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 6.0e-47 191.4 143 79.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 7.8e-47 191.0 155 68.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 7.8e-47 191.0 189 59.8
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 7.8e-47 191.0 148 70.9
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 2.3e-46 189.5 174 73.6
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.9e-46 188.7 168 65.5
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 5.0e-46 188.3 155 66.5
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.9e-45 186.4 148 71.6
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.9e-45 186.4 107 79.4
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.3e-45 185.7 205 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 5.6e-45 184.9 150 68.0
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 5.6e-45 184.9 147 72.1
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 7.3e-45 184.5 91 94.5
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 2.8e-44 182.6 147 70.1
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.3e-43 179.5 137 73.7
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.0e-43 178.7 159 71.7
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.0e-42 176.4 94 90.4
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.3e-41 173.7 86 94.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.7e-41 173.3 92 88.0
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 4.9e-41 171.8 173 61.8
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 7.8e-39 164.5 116 70.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 8.6e-38 161.0 100 86.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 6.8e-35 151.4 128 64.8
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.4e-34 149.1 164 64.6
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.7e-33 146.7 124 62.9
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-31 139.8 80 80.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 3.9e-30 135.6 105 68.6
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 3.1e-27 125.9 81 80.2
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.5e-26 123.6 76 69.7
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.4e-24 116.3 94 62.8
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.2e-23 114.0 57 94.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.0e-22 109.4 136 50.7
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.5e-21 107.1 94 52.1
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.0e-19 99.0 96 58.3
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 5.3e-19 98.6 96 58.3
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 6.9e-19 98.2 49 87.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 8.7e-14 81.3 68 67.6
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 8.7e-14 81.3 68 67.6
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 3.3e-13 79.3 68 66.2
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 7.4e-13 78.2 68 66.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 7.4e-13 78.2 68 66.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 7.4e-13 78.2 68 66.2
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.3e-11 72.0 46 80.4
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 4.9e-09 65.5 142 43.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.1e-07 60.1 35 74.3


User provided reference genes

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