Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.7e-278 961.4 520 100.0
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 6.3e-275 950.3 520 99.0
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 8.2e-267 923.3 522 97.5
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.4e-245 852.8 439 92.7
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.9e-239 832.4 440 91.4
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.9e-223 779.2 438 84.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-222 776.2 522 79.5
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 8.0e-222 773.9 423 84.2
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 5.2e-221 771.2 437 83.8
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 6.8e-221 770.8 444 83.1
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 6.8e-221 770.8 524 83.2
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.6e-220 768.8 424 85.6
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 3.7e-219 765.0 428 84.1
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.1e-218 763.5 426 84.5
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.4e-218 763.1 437 83.1
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 5.4e-218 761.1 430 84.9
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 5.4e-218 761.1 432 84.3
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.2e-217 760.0 427 84.1
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.6e-217 759.6 455 81.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.6e-217 759.6 425 84.0
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 6.6e-216 754.2 520 81.9
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 8.6e-216 753.8 439 82.5
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.1e-215 753.4 422 85.1
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.5e-215 753.1 424 82.8
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 4.3e-215 751.5 423 84.2
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.3e-215 751.5 424 83.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 9.5e-215 750.4 434 83.6
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.2e-214 750.0 437 82.8
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.6e-214 749.6 423 83.9
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.6e-214 749.6 449 80.2
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.7e-214 748.0 452 79.6
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.7e-214 748.0 452 79.6
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 6.2e-214 747.7 544 78.3
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.1e-213 745.3 433 83.4
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 4.0e-213 745.0 478 76.2
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 4.0e-213 745.0 433 83.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 2.6e-212 742.3 420 82.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 4.4e-212 741.5 421 83.1
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.8e-212 741.1 427 84.3
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 5.8e-212 741.1 445 80.4
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 9.8e-212 740.3 420 82.4
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 3.7e-211 738.4 426 82.2
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 1.1e-210 736.9 432 81.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.4e-210 735.7 422 82.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.2e-209 733.4 423 82.5
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.0e-209 731.1 437 81.2
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 7.8e-209 730.7 427 81.3
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.1e-207 726.9 443 78.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.5e-207 725.7 435 80.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 7.3e-207 724.2 421 82.2
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.6e-206 723.0 413 82.8
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.1e-206 722.6 430 81.4
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 4.7e-206 721.5 439 77.7
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 8.9e-205 717.2 432 80.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.5e-204 716.5 432 80.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.4e-204 714.9 439 79.3
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 6.4e-203 711.1 452 77.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.1e-201 706.1 488 71.5
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.0e-201 704.5 424 79.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 7.8e-201 704.1 418 80.6
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 7.8e-201 704.1 438 78.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.7e-200 703.0 432 79.4
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 3.1e-197 692.2 427 77.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.8e-197 691.0 449 74.2
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.6e-196 689.1 461 73.5
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 2.2e-195 686.0 439 73.3
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.9e-195 685.6 426 77.7
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.4e-195 684.5 418 78.7
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.9e-194 682.9 452 74.3
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 3.2e-194 682.2 428 78.3
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 6.0e-193 677.9 441 72.8
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-192 676.8 437 75.3
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.1e-191 673.7 520 73.5
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.9e-191 672.9 423 74.0
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 5.6e-191 671.4 448 71.7
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 3.6e-190 668.7 424 76.9
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.1e-189 667.2 446 70.2
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 3.1e-189 665.6 425 73.2
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.0e-189 665.2 420 74.8
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.0e-189 665.2 351 88.6
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 9.0e-189 664.1 428 73.4
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.2e-188 663.7 436 71.8
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 7.6e-188 661.0 436 71.6
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.3e-187 660.2 425 73.2
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.4e-186 656.0 423 72.8
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.4e-186 656.0 420 74.0
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.1e-186 654.4 426 74.9
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.0e-184 649.0 435 71.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.6e-182 643.3 395 80.0
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 4.8e-182 641.7 425 74.4
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.1e-181 640.6 450 69.1
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.5e-180 636.7 453 67.8
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.4e-178 629.4 420 71.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.4e-178 629.4 445 71.0
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-176 623.6 441 68.0
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-176 623.6 398 73.4
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.5e-175 619.4 380 77.6
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 5.6e-175 618.2 442 68.6
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 9.6e-175 617.5 395 75.9
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.5e-169 599.0 423 67.6
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.0e-169 598.2 399 73.7
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.5e-167 593.6 385 75.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 4.1e-165 585.5 464 64.7
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 9.0e-165 584.3 390 74.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.2e-164 583.9 424 67.0
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 2.1e-161 573.2 315 85.4
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.5e-159 567.0 306 84.6
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.7e-155 553.5 347 76.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 4.6e-153 545.4 323 79.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 9.1e-141 504.6 338 72.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.5e-138 497.3 327 74.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.7e-137 493.0 451 59.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.8e-134 483.0 293 78.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.7e-126 457.2 417 56.1
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.8e-126 455.7 472 52.3
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.5e-122 444.1 354 64.1
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 8.8e-120 434.9 455 51.9
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 9.8e-119 431.4 322 65.5
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 4.6e-108 396.0 218 80.3
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.8e-108 395.2 325 55.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 3.2e-101 373.2 191 90.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 5.8e-95 352.4 429 48.7
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.7e-89 332.8 234 70.5
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.6e-87 327.0 259 64.9
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.2e-68 265.0 292 63.7
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 2.3e-67 260.8 261 56.7
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.3e-50 203.4 115 83.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.9e-47 193.0 136 72.8
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 6.5e-46 189.5 170 64.1
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 3.0e-35 154.1 118 69.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 5.1e-35 153.3 291 34.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 5.0e-30 136.7 77 80.5
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.7e-27 126.3 79 77.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.8e-27 125.9 274 33.6
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.7e-20 103.6 80 62.5
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 6.1e-20 103.2 320 29.4
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.7e-14 85.1 52 71.2
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 3.4e-10 70.9 129 61.2
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-09 67.8 29 93.1
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.7e-09 67.4 100 44.0
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 3.5e-07 60.8 47 59.6
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 3.5e-07 60.8 46 63.0
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 7.7e-07 59.7 79 43.0
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 6.5e-06 56.6 28 89.3


User provided reference genes

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