Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1651.7 808 100.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1618.6 808 97.6
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1572.0 885 88.2
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1554.7 807 93.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1390.2 809 82.8
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1388.2 809 82.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1375.9 813 81.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1371.7 810 81.4
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1369.4 809 81.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1369.0 808 81.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1369.0 808 81.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1368.2 811 81.4
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 809 82.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1362.4 814 80.8
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1360.1 810 80.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 810 80.6
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 812 80.8
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 813 81.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1356.7 814 80.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1355.9 814 80.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1352.4 811 80.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1352.0 806 80.4
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1351.3 808 80.7
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1349.3 811 80.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1348.6 811 80.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1347.4 807 80.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1343.6 814 80.1
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 813 80.2
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 806 79.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 815 78.8
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1337.8 809 79.7
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1337.4 807 79.3
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1335.5 811 77.7
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 808 79.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1333.5 806 79.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1333.5 807 78.9
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1333.2 809 78.9
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 815 79.9
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 807 79.3
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 811 79.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 811 77.9
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1329.7 817 78.6
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1328.5 812 78.7
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1320.1 814 77.8
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1316.6 808 77.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 811 78.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1308.9 808 77.6
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1306.2 808 77.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1300.8 811 77.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1298.9 810 77.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1295.4 823 75.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 809 77.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 811 76.8
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 830 76.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 806 75.9
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1275.0 809 76.5
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 798 76.3
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 808 75.4
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 806 76.2
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 805 75.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 809 75.0
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 806 75.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 806 75.8
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 806 75.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 812 75.6
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 811 75.5
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 805 75.7
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 806 75.2
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 807 75.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 805 75.3
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 806 75.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 806 75.6
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 805 75.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 809 75.6
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 810 75.3
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 805 74.8
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 807 74.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 807 74.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 809 75.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 807 75.3
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 787 76.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 809 74.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 819 73.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 864 70.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 811 73.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 809 73.1
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1227.2 803 73.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1223.4 814 73.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 811 73.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 812 72.7
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 868 68.7
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1213.4 808 74.4
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 860 67.8
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 810 73.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 810 72.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1193.3 810 71.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1191.4 824 71.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 811 72.3
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 807 70.3
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 807 71.1
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 814 70.5
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 764 74.5
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1171.4 812 69.3
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 914 65.2
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 965 63.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1154.4 784 71.6
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 965 62.4
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1138.3 809 69.0
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1103.2 814 65.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1091.3 819 64.6
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1080.5 810 67.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1078.5 812 68.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.1e-291 1006.5 607 79.6
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 7.7e-288 993.8 803 61.3
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.0e-279 964.5 807 60.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.9e-246 856.3 786 58.4
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.2e-194 683.3 379 85.2
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 9.6e-190 667.9 860 43.8
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 9.0e-180 634.8 832 43.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.6e-160 569.7 810 43.1
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.0e-154 549.3 935 35.8
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.7e-147 526.9 849 38.3
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 4.7e-120 436.4 316 66.5
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.4e-119 434.9 372 59.1
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.6e-110 404.1 244 76.2
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.8e-109 400.2 347 61.7
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 4.2e-84 317.0 240 67.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 3.5e-83 313.9 671 34.7
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 8.7e-74 282.7 201 69.7
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.1e-65 255.8 175 72.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.0e-45 189.5 141 70.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 5.2e-42 177.2 194 54.6
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.2e-40 171.8 105 75.2
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.1e-39 167.5 90 83.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.6e-38 165.6 270 43.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.5e-36 159.1 105 67.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.0e-34 151.0 106 69.8
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 9.1e-31 139.8 181 47.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.8e-29 134.4 98 68.4
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 5.5e-28 130.6 123 59.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.7e-27 127.5 190 41.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.0e-26 124.8 118 55.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.0e-26 124.4 80 76.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.0e-25 122.1 114 50.9
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.3e-24 119.4 179 40.2
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.3e-21 108.6 109 55.0
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 3.8e-21 107.8 69 75.4
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 5.0e-21 107.5 263 28.5
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.3e-18 98.6 59 79.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 6.8e-18 97.1 68 67.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.6e-17 95.1 50 82.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 9.8e-17 93.2 75 58.7
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.4e-15 87.4 43 88.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.6e-14 85.9 137 40.9
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 3.9e-13 81.3 57 70.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.6e-11 75.9 61 52.5
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 4.7e-11 74.3 459 22.2
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 5.2e-10 70.9 129 36.4
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 6.8e-10 70.5 547 20.5
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.7e-08 64.7 57 61.4
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 3.7e-08 64.7 467 22.1
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 4.9e-08 64.3 439 20.3
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 8.3e-08 63.5 34 85.3
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.4e-07 62.0 57 57.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.2e-07 61.6 54 63.0
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 5.4e-07 60.8 70 54.3
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 2.7e-06 58.5 318 24.2
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 2.7e-06 58.5 273 23.8
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 7.8e-06 57.0 276 23.9


User provided reference genes

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