Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 8.9e-259 896.3 432 100.0
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 6.0e-255 883.6 432 98.4
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 2.0e-250 868.6 432 96.3
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 1.4e-235 819.3 433 91.0
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 7.4e-205 717.2 376 89.6
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 3.4e-202 708.4 428 79.2
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 2.0e-197 692.6 429 76.7
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 5.7e-197 691.0 431 76.3
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.1e-195 686.8 429 76.5
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 2.2e-193 679.1 428 76.2
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 3.9e-190 668.3 430 75.6
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 1.5e-189 666.4 424 74.1
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 6.3e-188 661.0 426 75.4
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 1.1e-187 660.2 427 73.1
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.1e-187 660.2 440 74.3
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.4e-187 659.1 367 82.0
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 4.1e-187 658.3 403 76.2
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 4.1e-187 658.3 401 78.6
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 2.6e-186 655.6 432 72.9
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.5e-186 655.2 371 81.4
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 2.2e-185 652.5 432 72.7
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 3.8e-185 651.7 437 73.5
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.0e-185 651.4 427 72.4
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 6.5e-185 651.0 432 72.2
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 1.9e-184 649.4 428 71.5
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 5.5e-184 647.9 428 71.0
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 5.5e-184 647.9 439 72.7
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 6.1e-183 644.4 434 72.1
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 6.1e-183 644.4 372 79.3
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 8.0e-183 644.0 363 79.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 1.0e-182 643.7 366 80.6
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 2.3e-182 642.5 430 71.9
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 3.0e-182 642.1 421 74.1
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 6.7e-182 641.0 429 71.8
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.2e-181 640.2 374 80.5
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 1.2e-181 640.2 420 73.1
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 2.0e-181 639.4 372 79.6
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 2.6e-181 639.0 363 80.4
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 4.4e-181 638.3 428 70.1
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.4e-181 638.3 374 80.5
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.3e-180 636.7 404 74.3
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.7e-180 636.3 432 70.4
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 2.2e-180 636.0 382 78.5
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 2.2e-180 636.0 379 79.4
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 1.1e-179 633.6 465 69.0
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 1.8e-179 632.9 369 79.1
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.8e-179 632.9 378 79.4
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 3.1e-179 632.1 427 70.5
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 3.1e-179 632.1 432 69.9
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 5.3e-179 631.3 420 71.0
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.2e-178 630.2 373 78.3
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.2e-178 630.2 430 70.9
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 4.5e-178 628.2 428 69.6
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 1.3e-177 626.7 434 69.8
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 1.3e-177 626.7 372 78.8
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.2e-177 625.9 372 78.0
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.2e-177 625.9 428 69.4
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 8.5e-177 624.0 426 70.4
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 8.5e-177 624.0 426 70.2
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.5e-176 623.2 430 69.8
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.9e-176 622.9 389 74.8
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 2.5e-176 622.5 374 77.5
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 5.5e-176 621.3 469 67.6
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 9.4e-176 620.5 372 76.3
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 1.2e-175 620.2 427 70.3
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.6e-175 619.8 370 78.4
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 2.7e-175 619.0 372 78.0
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 3.6e-175 618.6 427 68.9
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 6.1e-175 617.8 427 69.6
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 6.1e-175 617.8 427 70.0
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 4.0e-174 615.1 436 69.7
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 4.0e-174 615.1 469 64.2
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 6.8e-174 614.4 427 70.0
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.6e-173 612.5 372 76.1
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.2e-172 609.4 368 75.0
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.8e-172 609.0 401 72.8
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 4.8e-172 608.2 424 68.4
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 1.4e-171 606.7 418 70.1
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.2e-170 603.6 369 75.9
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 2.0e-170 602.8 372 75.8
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 4.5e-170 601.7 372 75.5
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 5.9e-170 601.3 374 74.3
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 5.9e-170 601.3 374 74.3
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.0e-169 600.5 372 73.9
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 2.9e-169 599.0 372 73.7
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.9e-169 599.0 369 74.5
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 5.0e-169 598.2 372 73.4
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 5.0e-169 598.2 370 74.3
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.5e-168 596.7 370 74.3
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 1.5e-168 596.7 446 65.0
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.2e-168 595.1 373 73.5
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 5.5e-168 594.7 432 66.4
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.8e-167 592.4 373 71.8
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 3.6e-167 592.0 370 73.5
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 4.7e-167 591.7 372 72.8
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 1.4e-166 590.1 370 74.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.4e-166 590.1 357 76.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.4e-166 590.1 357 76.2
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 1.8e-166 589.7 374 72.2
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 3.0e-166 589.0 362 76.2
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 4.0e-166 588.6 369 72.9
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 5.2e-166 588.2 353 77.6
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 2.6e-165 585.9 429 67.8
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 5.7e-165 584.7 372 72.0
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.3e-164 583.6 428 66.1
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 3.7e-164 582.0 366 72.7
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 6.3e-164 581.3 380 72.6
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 8.3e-164 580.9 369 71.0
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 2.0e-162 576.2 366 71.6
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 2.0e-162 576.2 366 71.6
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 2.3e-161 572.8 428 64.7
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.1e-160 570.5 435 63.7
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.9e-160 569.7 391 68.0
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 6.8e-158 561.2 391 67.0
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.4e-157 558.9 369 69.4
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.9e-155 553.1 400 66.2
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.9e-155 553.1 400 66.2
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.6e-151 540.0 319 77.7
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 6.2e-151 538.1 350 69.4
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.3e-144 515.4 369 66.9
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 1.8e-142 510.0 334 69.2
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 4.0e-142 508.8 325 70.5
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 1.5e-141 506.9 325 72.6
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 9.9e-141 504.2 401 63.1
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.4e-139 500.4 399 63.4
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 1.9e-139 500.0 339 66.7
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 2.1e-135 486.5 320 71.6
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 2.7e-130 469.5 363 60.6
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.3e-129 467.2 350 62.6
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.3e-129 467.2 352 63.4
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 2.6e-125 453.0 303 72.6
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 3.0e-121 439.5 430 55.6
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 5.6e-120 435.3 362 57.2
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 4.9e-116 422.2 322 60.6
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 1.1e-115 421.0 257 76.3
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.5e-109 400.6 380 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.9e-108 396.4 295 61.7
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 6.7e-105 385.2 259 69.1
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 2.5e-104 383.3 331 51.4
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 2.3e-97 360.1 220 74.1
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.7e-87 327.4 233 67.8
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 9.1e-86 321.6 362 46.1
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 1.7e-84 317.4 372 47.0
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 9.1e-70 268.5 156 79.5
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 6.3e-63 245.7 555 28.6
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.1e-62 245.0 340 37.9
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 4.2e-59 233.0 321 40.5
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.8e-57 227.6 138 71.7
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 6.8e-57 225.7 286 41.6
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 7.5e-56 222.2 155 64.5
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 8.9e-49 198.7 153 60.1
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.1e-43 181.8 131 61.1
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 5.6e-43 179.5 136 57.4
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 4.6e-37 159.8 240 37.9
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.6e-34 151.4 105 67.6
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 2.9e-31 140.6 301 31.9
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 3.0e-28 130.6 76 78.9
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 2.1e-26 124.4 81 66.7
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 4.7e-26 123.2 125 57.6
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 2.3e-25 120.9 110 59.1
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.0e-24 117.9 73 74.0
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 2.2e-23 114.4 60 88.3
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.9e-23 113.2 75 68.0
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.1e-22 112.1 113 57.5
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 4.6e-21 106.7 153 41.8
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 2.3e-20 104.4 110 51.8
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 6.6e-20 102.8 111 56.8
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 8.6e-20 102.4 153 40.5
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.9e-19 101.3 111 56.8
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 7.3e-19 99.4 79 55.7
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 1.1e-17 95.5 60 70.0
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 3.1e-17 94.0 57 80.7
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 5.2e-17 93.2 96 54.2
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 8.9e-17 92.4 109 52.3
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 9.9e-16 89.0 146 37.7
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 4.9e-15 86.7 69 59.4
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 3.2e-14 84.0 146 37.0
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 3.9e-12 77.0 53 67.9
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 1.3e-10 72.0 51 64.7
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 2.8e-10 70.9 87 41.4
Cre06.g284800 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044119 2.9e-07 60.8 188 28.7
Cre10.g423400 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044199 4.9e-07 60.1 186 25.8
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 1.1e-06 58.9 66 51.5


User provided reference genes

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