Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.0e-300 1035.0 525 100.0
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 6.3e-283 976.9 526 94.9
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.5e-271 939.1 526 90.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 2.4e-242 842.0 533 80.1
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 4.7e-145 518.8 526 52.9
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.7e-140 503.1 530 53.6
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 4.4e-135 485.7 534 52.2
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 9.8e-135 484.6 535 52.1
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.3e-134 484.2 534 50.9
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 2.9e-134 483.0 528 52.5
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 3.7e-134 482.6 576 48.8
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.1e-133 481.1 598 47.5
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.6e-132 477.2 535 50.5
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 2.7e-132 476.5 530 52.8
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 1.3e-131 474.2 549 48.8
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 2.3e-131 473.4 533 49.9
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 1.5e-130 470.7 579 48.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 2.5e-130 469.9 531 50.7
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 3.3e-130 469.5 526 50.8
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 4.3e-130 469.2 550 48.2
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 5.6e-130 468.8 563 47.6
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 9.5e-130 468.0 541 48.2
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.2e-129 467.6 563 46.5
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.6e-129 467.2 706 42.5
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.8e-128 463.8 558 48.2
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.8e-128 463.8 550 48.2
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 4.0e-128 462.6 574 46.5
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 2.9e-126 456.4 553 47.4
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.1e-125 454.5 560 47.1
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 7.1e-125 451.8 524 49.2
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.6e-124 450.7 550 46.5
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 3.5e-124 449.5 553 45.8
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 6.0e-124 448.7 584 45.5
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 3.9e-123 446.0 575 45.9
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 2.5e-122 443.4 540 48.5
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 5.6e-122 442.2 565 45.5
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 4.7e-121 439.1 568 45.1
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 6.2e-121 438.7 554 47.1
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 8.1e-121 438.3 558 46.8
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.3e-120 436.8 532 48.3
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 2.2e-118 430.3 568 45.4
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.9e-118 429.9 576 43.8
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.4e-117 427.6 517 49.5
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 9.2e-117 424.9 537 47.3
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.2e-116 424.5 540 46.3
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.6e-116 424.1 583 44.3
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.6e-116 424.1 544 46.3
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.7e-115 420.6 549 44.1
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 6.6e-115 418.7 545 46.8
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.1e-114 417.9 550 45.6
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 5.6e-114 415.6 549 43.5
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 1.2e-113 414.5 571 44.3
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 3.6e-113 412.9 548 44.5
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 2.0e-111 407.1 547 44.1
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 2.0e-111 407.1 550 44.2
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 7.6e-111 405.2 610 40.5
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 8.4e-110 401.7 508 46.3
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 8.4e-110 401.7 566 44.0
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 1.1e-109 401.4 476 48.1
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 5.4e-109 399.1 540 42.8
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 9.3e-109 398.3 556 44.2
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 2.1e-108 397.1 590 41.5
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 6.0e-108 395.6 575 43.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.6e-106 389.0 676 38.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 6.2e-105 385.6 585 41.2
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 3.1e-104 383.3 540 45.2
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 4.0e-104 382.9 525 44.0
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 9.0e-104 381.7 538 45.2
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 2.6e-103 380.2 552 41.7
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 6.4e-102 375.6 550 40.7
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 6.4e-102 375.6 540 40.9
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 4.2e-101 372.9 553 41.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 7.1e-101 372.1 547 40.6
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.2e-100 371.3 521 42.0
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.1e-100 370.5 540 40.4
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 3.9e-99 366.3 458 48.7
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 2.5e-98 363.6 536 41.6
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 2.1e-97 360.5 547 39.9
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 1.5e-95 354.4 522 40.0
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 4.5e-95 352.8 563 41.2
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.3e-89 334.7 455 43.7
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.8e-88 330.9 501 43.1
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 4.0e-88 329.7 581 39.6
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.2e-85 319.7 496 42.5
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.7e-84 317.0 555 36.2
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 2.9e-78 297.0 548 36.7
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 4.2e-77 293.1 332 47.6
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.0e-75 288.5 466 39.1
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 4.3e-74 283.1 477 37.9
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 7.7e-71 272.3 552 34.2
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 5.5e-69 266.2 448 38.4
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 6.1e-68 262.7 413 42.4
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.4e-67 261.5 393 43.5
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.8e-64 251.1 501 35.5
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 6.9e-64 249.2 441 37.4
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.0e-59 235.3 209 58.4
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 3.9e-59 233.4 597 31.3
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.1e-58 231.9 422 36.7
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 7.0e-56 222.6 364 41.2
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.9e-53 214.5 539 31.2
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 2.5e-53 214.2 192 55.2
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 8.8e-51 205.7 478 35.4
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 7.5e-50 202.6 211 51.7
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.5e-47 193.4 148 64.2
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.0e-46 192.2 148 64.2
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 2.3e-43 181.0 358 37.4
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.5e-37 161.8 322 37.0
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 3.2e-37 160.6 138 60.1
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.2e-37 159.5 119 61.3
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 1.7e-33 148.3 579 27.8
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 1.4e-32 145.2 209 44.5
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 2.3e-27 127.9 120 55.0
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 7.5e-26 122.9 359 28.4
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.8e-20 104.4 145 40.7
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.6e-15 87.0 82 57.3
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 5.6e-13 80.1 66 57.6
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.8e-11 75.1 65 53.8
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 6.8e-11 73.2 200 29.5
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.9e-06 57.4 61 49.2


User provided reference genes

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