Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1337.0 708 100.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1309.3 726 96.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1286.9 708 96.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1286.6 710 96.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 708 85.9
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1182.2 708 85.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1180.2 708 85.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 697 87.2
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 708 85.2
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1176.4 708 85.7
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 708 85.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 711 85.9
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 708 84.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1173.7 708 85.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 708 85.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 708 85.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 708 87.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 708 84.3
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 708 84.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 691 86.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 697 85.8
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 697 85.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 708 85.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 708 84.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 704 85.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 706 85.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 708 83.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 690 87.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 708 83.6
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 708 83.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 690 85.9
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 697 85.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 708 83.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 690 85.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 690 85.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 690 85.4
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 694 84.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 700 84.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 690 86.4
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 704 84.4
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 708 83.9
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 691 86.8
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 702 82.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 703 83.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 691 84.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 694 83.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 736 81.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 704 82.8
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 694 84.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 700 84.3
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 695 83.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 689 85.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 708 81.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 719 81.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 695 83.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 694 84.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 693 82.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 702 83.5
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 736 79.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 731 79.9
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 716 80.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 715 82.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 671 85.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 706 80.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 704 80.7
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 704 80.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 704 80.4
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 708 79.9
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 708 79.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 704 80.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 704 80.3
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 705 80.4
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 708 79.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 685 82.5
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 709 80.8
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 708 79.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 685 82.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 708 80.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 697 81.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1095.1 708 78.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1093.2 740 76.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 697 79.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 694 80.3
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1090.9 695 80.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1082.4 668 82.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 686 80.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1078.9 705 78.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 9.7e-312 1072.8 777 73.4
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.4e-311 1071.6 686 80.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.4e-311 1071.2 705 79.1
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 4.5e-308 1060.8 750 74.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 7.6e-308 1060.1 682 79.9
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.9e-305 1050.0 740 75.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.3e-304 1048.5 696 76.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 5.7e-303 1043.9 708 75.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.7e-303 1043.9 666 81.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.5e-295 1019.2 690 75.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.0e-295 1018.8 716 74.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 7.4e-287 990.3 747 69.1
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.4e-282 973.4 631 80.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 5.7e-279 964.1 591 82.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 6.1e-273 944.1 620 78.1
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.2e-270 935.6 682 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.0e-267 926.8 689 68.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.0e-267 926.8 689 68.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.5e-266 922.2 683 73.4
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.0e-264 914.8 584 79.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.3e-262 907.5 692 67.3
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.7e-259 899.4 697 66.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.5e-258 895.6 589 78.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 6.8e-256 887.5 566 78.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.4e-253 879.8 554 80.9
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.4e-247 858.6 518 84.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 8.1e-241 837.4 676 67.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.9e-230 801.6 496 83.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.7e-219 766.5 682 57.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.1e-204 716.5 682 53.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.8e-201 706.1 423 82.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-193 679.9 470 77.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.4e-152 542.3 328 79.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 9.8e-146 521.5 732 41.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 9.2e-136 488.4 755 37.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.7e-132 476.1 280 85.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-128 464.9 273 85.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-124 451.4 269 85.9
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.4e-112 409.5 359 59.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-111 407.5 237 86.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.1e-111 407.5 253 80.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-110 404.8 233 85.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.1e-108 397.5 744 34.8
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.4e-97 359.0 261 75.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.5e-95 353.6 252 75.4
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.7e-78 296.2 182 78.6
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.7e-76 290.4 215 69.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-72 277.7 148 88.5
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.2e-71 275.4 193 78.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.2e-68 262.7 195 70.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-59 233.4 155 65.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-56 225.7 192 68.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.7e-55 220.3 156 72.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 7.9e-55 219.5 164 72.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 6.3e-52 209.9 489 29.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.8e-46 191.8 180 63.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 8.8e-46 189.5 237 48.9
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.5e-42 177.6 102 88.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.9e-41 174.5 114 80.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.5e-41 172.9 111 84.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.2e-40 170.6 122 73.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.7e-36 158.7 111 73.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-28 132.5 151 53.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-27 128.3 100 66.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.7e-26 124.8 72 88.9
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 4.5e-26 124.0 100 64.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 4.5e-26 124.0 100 64.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-25 121.7 75 82.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-24 119.4 99 64.6
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 8.0e-23 113.2 127 52.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-21 109.4 69 75.4
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.7e-20 104.4 63 77.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.3e-20 103.2 57 86.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.6e-18 99.0 59 79.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.0e-18 98.6 77 64.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.2e-15 89.4 65 72.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-15 88.6 78 60.3
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.2e-12 78.6 61 68.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.9e-12 78.2 61 68.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 6.4e-12 77.0 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.6e-09 67.0 50 64.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.1e-08 66.2 40 82.5


User provided reference genes

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