Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.6e-265 916.8 450 100.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.1e-247 858.6 419 100.0
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 5.9e-221 770.8 451 86.5
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.0e-208 729.2 462 80.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 7.9e-117 424.9 501 48.5
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 6.9e-113 411.8 471 49.9
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 4.2e-110 402.5 467 48.4
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.6e-107 393.3 467 46.9
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 2.8e-106 389.8 474 46.6
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 6.3e-106 388.7 440 49.5
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.4e-105 386.7 485 47.2
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 3.1e-105 386.3 441 49.0
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.7e-103 380.6 323 65.3
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.8e-103 379.4 474 46.4
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 5.0e-103 379.0 475 44.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.4e-102 377.5 461 47.5
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.6e-101 374.0 435 48.3
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.1e-101 373.6 469 45.4
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.0e-100 371.3 491 44.4
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-100 370.5 450 47.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 6.7e-100 368.6 451 46.1
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.6e-99 366.7 434 47.2
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.4e-99 365.9 436 45.9
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.8e-98 363.2 469 45.6
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.7e-98 362.8 450 46.7
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 8.2e-98 361.7 497 44.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.8e-97 360.5 445 47.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.8e-97 360.5 457 45.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 3.1e-97 359.8 449 44.5
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.3e-95 354.4 430 46.0
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.8e-95 352.8 434 47.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.0e-95 352.4 432 44.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 2.5e-94 350.1 459 45.1
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.2e-94 349.4 372 50.3
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.6e-93 347.4 432 46.8
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 3.6e-93 346.3 460 46.3
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.8e-92 344.0 431 46.2
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 4.0e-92 342.8 382 50.3
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.0e-92 342.8 477 44.0
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.0e-91 340.5 439 45.3
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.4e-91 339.3 465 44.3
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 4.4e-91 339.3 486 41.8
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.8e-90 336.7 427 47.1
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 3.7e-90 336.3 377 49.9
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 6.3e-90 335.5 460 43.5
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.4e-89 334.3 429 46.6
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.8e-89 334.0 376 49.7
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 4.1e-89 332.8 433 45.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 9.1e-89 331.6 456 46.1
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-88 330.9 450 43.3
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 3.5e-88 329.7 455 44.6
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 7.7e-88 328.6 367 49.6
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.3e-87 327.8 485 41.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 6.5e-87 325.5 434 44.0
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-86 324.7 463 43.2
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.5e-86 324.3 455 44.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 5.5e-86 322.4 443 44.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.6e-85 320.9 452 44.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-85 320.5 366 47.8
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.7e-85 320.1 452 44.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.6e-85 319.7 490 40.4
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 6.1e-85 318.9 454 43.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.4e-84 317.8 443 43.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 8.8e-84 315.1 474 40.9
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.2e-83 314.7 437 42.3
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 2.6e-83 313.5 378 47.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 3.4e-83 313.2 437 42.3
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 2.8e-82 310.1 387 48.8
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.7e-82 309.7 459 41.4
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.0e-80 303.9 517 37.7
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.7e-80 303.5 285 56.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 5.9e-80 302.4 369 45.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.0e-79 301.6 433 41.3
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.9e-78 297.4 428 40.7
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.0e-76 291.6 435 40.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.8e-76 290.8 371 44.5
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 8.9e-76 288.5 431 39.9
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.2e-75 288.1 428 40.2
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.4e-75 286.6 428 40.7
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 5.7e-75 285.8 432 38.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 7.5e-75 285.4 476 37.8
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 9.8e-75 285.0 426 38.3
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 8.3e-74 282.0 432 38.9
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 8.3e-74 282.0 432 38.7
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.8e-73 280.8 429 37.8
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.4e-73 280.4 388 41.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 4.1e-73 279.6 429 37.5
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 5.4e-73 279.3 431 38.3
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 9.2e-73 278.5 427 42.2
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.7e-72 276.9 423 41.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.8e-72 275.4 426 42.3
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.0e-71 275.0 429 37.3
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.0e-71 275.0 454 39.9
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 8.6e-71 271.9 435 38.6
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.5e-70 271.2 441 36.3
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 5.6e-70 269.2 420 39.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.2e-69 268.1 455 39.6
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.1e-69 265.8 412 38.8
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.0e-68 263.1 418 38.5
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 8.3e-66 255.4 430 37.7
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.9e-65 254.2 438 37.9
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 6.0e-64 249.2 286 47.9
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-62 245.0 509 35.4
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 3.3e-62 243.4 383 37.1
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 5.6e-62 242.7 316 45.6
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 3.6e-61 240.0 305 45.2
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 8.9e-60 235.3 382 38.0
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 9.8e-59 231.9 469 34.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 1.1e-57 228.4 390 40.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.4e-57 227.3 494 34.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 9.2e-57 225.3 234 52.6
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.6e-56 223.0 438 37.4
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 5.6e-54 216.1 142 71.1
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 7.1e-49 199.1 296 40.5
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.6e-48 198.0 381 33.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 6.0e-48 196.1 298 40.3
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.8e-48 195.7 191 55.0
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.0e-47 195.3 315 37.5
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.6e-45 186.8 350 38.0
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.4e-44 184.1 381 33.9
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.4e-44 184.1 369 34.7
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 8.4e-42 175.6 147 59.2
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.3e-41 172.2 426 30.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.7e-39 167.9 465 29.0
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 5.1e-39 166.4 150 57.3
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.4e-36 158.3 359 33.1
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 4.9e-34 149.8 145 51.0
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 5.4e-33 146.4 290 36.6
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 7.1e-33 146.0 102 66.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.5e-32 143.7 326 32.8
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-31 141.4 235 39.6
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 5.1e-31 139.8 217 39.6
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.6e-30 136.3 538 26.4
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 5.3e-28 129.8 295 32.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.3e-28 129.8 167 40.7
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 8.4e-26 122.5 97 58.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-24 117.9 270 34.4
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-24 117.9 270 34.4
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.8e-23 114.8 222 37.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 8.7e-23 112.5 452 24.8
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-22 110.9 432 26.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.3e-22 110.2 246 33.3
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.3e-21 108.6 125 44.8
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.8e-20 104.8 184 35.3
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.5e-19 101.7 106 49.1
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.6e-19 100.9 400 25.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 7.6e-19 99.4 457 24.3
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.0e-18 99.0 358 27.1
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.4e-17 95.1 92 50.0
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.1e-17 92.8 106 46.2
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 2.7e-16 90.9 133 43.6
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.7e-16 90.9 258 33.7
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 7.9e-16 89.4 243 31.7
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.9e-14 84.7 136 36.0
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 9.6e-14 82.4 204 31.4
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 2.1e-13 81.3 402 23.9
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.0e-10 72.4 282 26.6
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 5.0e-10 70.1 63 50.8
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.3e-07 61.2 108 32.4
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 2.3e-07 61.2 140 35.7
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 5.1e-07 60.1 65 49.2


User provided reference genes

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