Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 3.5e-62 241.5 126 100.0
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 2.3e-45 185.7 126 81.7
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 1.5e-36 156.4 126 73.0
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 7.3e-36 154.1 126 72.2
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 7.3e-36 154.1 126 72.2
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 3.6e-35 151.8 126 69.8
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 6.2e-35 151.0 133 67.7
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.1e-34 150.2 126 69.8
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 1.8e-34 149.4 126 69.8
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 1.8e-34 149.4 126 69.8
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 1.8e-34 149.4 126 69.8
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.3e-34 149.1 126 69.0
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 4.0e-34 148.3 126 69.0
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 4.0e-34 148.3 126 69.0
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 4.0e-34 148.3 126 69.0
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 5.2e-34 147.9 126 69.0
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 5.2e-34 147.9 126 69.0
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 5.2e-34 147.9 126 69.0
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 5.2e-34 147.9 126 69.0
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 5.2e-34 147.9 126 68.3
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 6.8e-34 147.5 125 69.6
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 6.8e-34 147.5 125 69.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 6.8e-34 147.5 122 70.5
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 6.8e-34 147.5 126 68.3
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 6.8e-34 147.5 126 67.5
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 67.5
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 1.2e-33 146.7 124 68.5
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 1.2e-33 146.7 124 68.5
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 1.2e-33 146.7 126 68.3
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 68.3
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 68.3
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 68.3
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 68.3
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 68.3
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.5e-33 146.4 126 67.5
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 67.5
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 68.3
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 67.5
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 68.3
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 67.5
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 67.5
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 2.0e-33 146.0 126 67.5
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 2.6e-33 145.6 126 67.5
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 2.6e-33 145.6 125 68.8
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 2.6e-33 145.6 125 68.8
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 2.6e-33 145.6 125 68.8
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 2.6e-33 145.6 124 67.7
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.4e-33 145.2 126 68.3
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 3.4e-33 145.2 126 66.7
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 3.4e-33 145.2 126 67.5
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.4e-33 145.2 126 66.7
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.4e-33 145.2 126 66.7
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 4.4e-33 144.8 126 67.5
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 4.4e-33 144.8 124 68.5
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 4.4e-33 144.8 124 68.5
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 4.4e-33 144.8 126 67.5
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 5.8e-33 144.4 126 67.5
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 5.8e-33 144.4 126 67.5
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 5.8e-33 144.4 126 66.7
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 7.6e-33 144.1 123 69.1
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 7.6e-33 144.1 126 66.7
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 9.9e-33 143.7 126 67.5
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 9.9e-33 143.7 126 65.9
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 9.9e-33 143.7 123 68.3
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 9.9e-33 143.7 124 66.9
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 1.3e-32 143.3 126 65.1
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.3e-32 143.3 126 66.7
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 1.3e-32 143.3 126 65.9
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 1.3e-32 143.3 124 67.7
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 1.3e-32 143.3 124 67.7
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 1.3e-32 143.3 124 67.7
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 65.9
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 65.9
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 65.9
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 1.7e-32 142.9 123 68.3
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 66.7
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 66.7
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 66.7
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 1.7e-32 142.9 126 65.9
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 2.2e-32 142.5 126 63.5
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 2.2e-32 142.5 123 67.5
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 2.2e-32 142.5 123 67.5
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 2.9e-32 142.1 126 65.9
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 3.7e-32 141.7 126 66.7
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.7e-32 141.7 126 65.1
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.7e-32 141.7 126 65.1
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 3.7e-32 141.7 125 66.4
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 4.9e-32 141.4 125 66.4
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 4.9e-32 141.4 124 65.3
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 4.9e-32 141.4 127 66.9
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 6.4e-32 141.0 126 61.9
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 8.4e-32 140.6 124 62.9
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 8.4e-32 140.6 126 65.1
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.1e-31 140.2 124 65.3
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.1e-31 140.2 124 62.1
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.1e-31 140.2 126 61.9
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.4e-31 139.8 126 61.1
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.9e-31 139.4 124 62.1
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.9e-31 139.4 126 64.3
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 2.4e-31 139.0 126 61.9
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 2.4e-31 139.0 126 61.9
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 2.4e-31 139.0 126 61.9
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 3.2e-31 138.7 126 60.3
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 4.1e-31 138.3 124 62.1
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 5.4e-31 137.9 124 61.3
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 1.2e-30 136.7 121 66.1
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 1.6e-30 136.3 126 61.1
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.6e-30 136.3 121 66.9
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 2.1e-30 136.0 143 60.1
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 2.7e-30 135.6 126 59.5
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 3.5e-30 135.2 123 61.0
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 4.6e-30 134.8 125 63.2
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 4.6e-30 134.8 123 61.8
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 6.0e-30 134.4 127 60.6
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 7.8e-30 134.0 123 61.0
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 7.8e-30 134.0 126 60.3
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 7.8e-30 134.0 123 61.0
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 7.8e-30 134.0 126 60.3
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 7.8e-30 134.0 123 61.0
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 7.8e-30 134.0 126 60.3
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 7.8e-30 134.0 123 61.0
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 7.8e-30 134.0 126 60.3
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 7.8e-30 134.0 123 61.0
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 7.8e-30 134.0 126 60.3
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 1.0e-29 133.7 126 61.1
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 1.7e-29 132.9 123 61.0
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 6.6e-29 131.0 127 59.8
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 1.9e-28 129.4 125 60.8
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 2.5e-28 129.0 120 58.3
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 3.3e-28 128.6 121 58.7
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.9e-24 115.5 61 95.1
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.4e-23 113.2 58 94.8
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 2.4e-23 112.5 59 94.9
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 4.2e-23 111.7 125 50.4
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 1.0e-21 107.1 59 86.4
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 1.1e-20 103.6 105 60.0
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 2.1e-19 99.4 99 62.6
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 3.6e-19 98.6 109 58.7
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 4.8e-19 98.2 99 61.6
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 6.2e-19 97.8 99 60.6
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 6.2e-19 97.8 99 61.6
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.4e-18 96.7 99 60.6
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 3.1e-18 95.5 96 62.5
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 3.1e-18 95.5 137 49.6
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 4.0e-18 95.1 52 92.3
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 5.3e-18 94.7 98 60.2
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 9.0e-18 94.0 117 45.3
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 1.5e-17 93.2 52 90.4
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 4.4e-17 91.7 52 88.5
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 7.6e-17 90.9 100 54.0
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 4.9e-16 88.2 121 49.6
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 2.3e-13 79.3 96 50.0
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 2.1e-11 72.8 89 53.9
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.1e-10 70.5 116 37.1
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-06 57.0 31 90.3


User provided reference genes

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