Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 0.0e+00 3074.3 1858 100.0
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.5e-52 213.4 325 48.6
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 1.1e-23 117.5 336 29.8
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 1.5e-23 117.1 304 30.6
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 1.9e-23 116.7 304 30.6
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 5.5e-23 115.2 333 28.5
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 7.2e-23 114.8 302 28.8
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 9.5e-23 114.4 300 29.3
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 2.8e-22 112.8 305 29.5
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 2.8e-22 112.8 304 28.3
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 2.8e-22 112.8 304 29.9
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 3.6e-22 112.5 300 29.7
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 4.7e-22 112.1 300 30.3
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 6.1e-22 111.7 305 29.2
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 1.0e-21 110.9 304 30.3
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 1.4e-21 110.5 304 28.9
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 1.4e-21 110.5 303 29.4
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 1.8e-21 110.2 300 29.0
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 1.8e-21 110.2 304 29.9
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 2.3e-21 109.8 304 29.3
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 2.3e-21 109.8 304 30.3
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 3.0e-21 109.4 300 29.3
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 3.0e-21 109.4 300 29.3
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 4.0e-21 109.0 303 27.4
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 5.2e-21 108.6 304 28.3
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 5.2e-21 108.6 304 29.6
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 5.2e-21 108.6 300 29.3
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 5.2e-21 108.6 304 28.0
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 5.2e-21 108.6 294 29.9
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 5.2e-21 108.6 312 29.8
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.2e-20 107.5 300 29.3
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 1.2e-20 107.5 304 27.3
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 1.2e-20 107.5 302 28.8
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.2e-20 107.5 329 28.6
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 1.5e-20 107.1 304 29.6
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 1.5e-20 107.1 302 29.1
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.5e-20 107.1 305 28.9
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 1.5e-20 107.1 332 27.7
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 1.5e-20 107.1 304 29.3
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.0e-20 106.7 300 29.0
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 2.6e-20 106.3 300 29.0
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 3.4e-20 105.9 300 28.3
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 3.4e-20 105.9 300 30.0
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 4.4e-20 105.5 333 26.7
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 5.7e-20 105.1 305 29.2
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 5.7e-20 105.1 306 28.1
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 7.5e-20 104.8 303 28.4
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 9.8e-20 104.4 304 28.0
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 1.7e-19 103.6 330 27.3
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 2.2e-19 103.2 304 27.3
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 2.2e-19 103.2 306 28.1
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 2.2e-19 103.2 300 29.7
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 2.2e-19 103.2 304 27.6
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 2.8e-19 102.8 300 28.7
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 4.9e-19 102.1 310 29.7
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 8.3e-19 101.3 330 28.2
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 1.1e-18 100.9 301 28.9
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 1.1e-18 100.9 304 27.6
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 1.1e-18 100.9 304 27.0
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 1.4e-18 100.5 304 28.6
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.8e-18 100.1 304 28.0
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.8e-18 100.1 294 27.6
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 2.4e-18 99.8 304 28.6
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 2.4e-18 99.8 304 27.6
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 3.1e-18 99.4 304 28.3
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 3.1e-18 99.4 304 27.3
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 3.1e-18 99.4 306 28.4
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 4.1e-18 99.0 304 28.6
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 5.4e-18 98.6 304 28.6
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 7.0e-18 98.2 304 29.6
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 7.0e-18 98.2 304 28.9
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 9.2e-18 97.8 304 28.0
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 9.2e-18 97.8 304 27.6
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 9.2e-18 97.8 294 27.6
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 2.0e-17 96.7 305 27.2
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 2.7e-17 96.3 307 26.4
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 2.7e-17 96.3 320 27.2
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 3.5e-17 95.9 300 27.3
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 7.7e-17 94.7 304 28.0
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.3e-16 94.0 304 28.3
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 1.7e-16 93.6 298 27.5
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 2.3e-16 93.2 298 28.2
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 6.6e-16 91.7 308 27.6
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.9e-15 90.1 298 28.2
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 1.2e-14 87.4 287 27.2
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 2.8e-14 86.3 117 43.6
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 6.1e-14 85.1 326 25.5
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 8.0e-14 84.7 103 45.6
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 1.4e-13 84.0 105 43.8
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 9.8e-12 77.8 113 38.1
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.7e-11 77.0 301 27.9
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 4.9e-11 75.5 325 22.2
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.4e-10 73.9 76 46.1
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 2.4e-10 73.2 104 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 3.2e-10 72.8 89 40.4
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.2e-09 70.9 83 42.2
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 1.6e-09 70.5 79 43.0
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 1.3e-08 67.4 103 38.8
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 1.7e-08 67.0 100 35.0
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 5.0e-08 65.5 74 45.9
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.1e-07 64.3 102 37.3
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.5e-07 63.9 75 45.3
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 2.1e-06 60.1 103 39.8


User provided reference genes

Program Settings