Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 2.3e-150 535.4 254 100.0
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 5.7e-80 301.6 255 56.5
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 5.4e-46 188.7 243 43.6
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 2.7e-45 186.4 259 41.7
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 2.7e-45 186.4 249 42.2
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 3.5e-45 186.0 251 43.0
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 4.6e-45 185.7 249 43.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.6e-45 185.7 244 43.9
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 6.0e-45 185.3 249 43.0
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.0e-44 184.5 249 43.0
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 1.0e-44 184.5 251 43.0
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 1.0e-44 184.5 249 42.2
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 1.3e-44 184.1 249 43.0
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.3e-44 184.1 249 43.0
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 1.7e-44 183.7 249 43.0
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.7e-44 183.7 257 42.0
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 2.3e-44 183.3 230 44.8
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 2.3e-44 183.3 251 43.4
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 2.3e-44 183.3 249 42.6
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 3.0e-44 183.0 244 43.0
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 3.9e-44 182.6 249 43.0
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 3.9e-44 182.6 249 41.8
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 5.0e-44 182.2 244 43.9
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 5.0e-44 182.2 249 42.6
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 5.0e-44 182.2 249 42.6
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 5.0e-44 182.2 251 43.0
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 5.0e-44 182.2 250 43.2
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 5.0e-44 182.2 244 43.9
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 5.0e-44 182.2 249 42.6
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 6.6e-44 181.8 257 40.9
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 6.6e-44 181.8 257 40.9
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 6.6e-44 181.8 251 43.0
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 6.6e-44 181.8 259 41.3
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 8.6e-44 181.4 249 42.6
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 8.6e-44 181.4 249 42.6
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 8.6e-44 181.4 249 42.6
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 8.6e-44 181.4 261 42.9
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 8.6e-44 181.4 262 41.6
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 8.6e-44 181.4 249 41.8
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 1.1e-43 181.0 252 41.7
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.1e-43 181.0 246 41.9
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 1.1e-43 181.0 249 42.6
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 1.1e-43 181.0 247 43.3
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 43.0
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 43.0
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 1.5e-43 180.6 245 42.0
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.6
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.5e-43 180.6 257 41.6
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 1.5e-43 180.6 251 41.8
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.5e-43 180.6 249 42.2
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.2
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.2
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.5e-43 180.6 260 40.8
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.6
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.2
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 1.5e-43 180.6 249 41.8
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 1.5e-43 180.6 244 42.6
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 1.9e-43 180.3 249 42.2
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 1.9e-43 180.3 257 41.2
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 1.9e-43 180.3 257 41.2
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 1.9e-43 180.3 261 42.1
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 2.5e-43 179.9 249 42.2
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 2.5e-43 179.9 251 41.8
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 2.5e-43 179.9 249 42.2
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 2.5e-43 179.9 244 42.2
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 2.5e-43 179.9 245 41.6
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 2.5e-43 179.9 256 41.8
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 2.5e-43 179.9 249 42.2
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 2.5e-43 179.9 251 42.6
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 2.5e-43 179.9 259 40.2
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 3.3e-43 179.5 249 42.2
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 3.3e-43 179.5 249 41.8
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 3.3e-43 179.5 244 42.2
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 3.3e-43 179.5 244 42.2
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 3.3e-43 179.5 244 42.2
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 3.3e-43 179.5 237 43.9
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.3e-43 179.1 249 41.8
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 4.3e-43 179.1 260 40.4
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 4.3e-43 179.1 260 40.4
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 4.3e-43 179.1 244 42.2
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 4.3e-43 179.1 246 42.3
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 4.3e-43 179.1 244 42.2
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 4.3e-43 179.1 257 40.1
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 4.3e-43 179.1 242 43.0
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 4.3e-43 179.1 242 43.0
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 4.3e-43 179.1 236 41.5
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 5.6e-43 178.7 256 41.0
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 5.6e-43 178.7 228 44.3
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 5.6e-43 178.7 249 43.0
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 5.6e-43 178.7 225 45.3
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 5.6e-43 178.7 235 43.4
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 5.6e-43 178.7 244 42.2
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 5.6e-43 178.7 249 41.8
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 5.6e-43 178.7 249 41.0
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 7.3e-43 178.3 244 42.2
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 7.3e-43 178.3 249 42.2
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 7.3e-43 178.3 244 42.2
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 7.3e-43 178.3 249 41.4
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 7.3e-43 178.3 244 42.2
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 7.3e-43 178.3 244 41.8
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 7.3e-43 178.3 246 42.7
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 7.3e-43 178.3 226 46.5
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 7.3e-43 178.3 244 42.6
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 7.3e-43 178.3 246 41.5
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 9.5e-43 177.9 244 41.8
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 9.5e-43 177.9 245 42.0
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 9.5e-43 177.9 249 41.4
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 9.5e-43 177.9 249 42.6
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 9.5e-43 177.9 249 42.6
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.2e-42 177.6 249 41.8
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.2e-42 177.6 249 41.8
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 1.2e-42 177.6 249 41.4
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.2e-42 177.6 244 41.8
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 1.2e-42 177.6 244 42.2
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 1.6e-42 177.2 244 42.2
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 1.6e-42 177.2 258 40.3
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.6e-42 177.2 244 41.4
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 1.6e-42 177.2 244 41.4
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 2.1e-42 176.8 246 41.9
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 2.1e-42 176.8 249 41.4
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 2.1e-42 176.8 235 42.6
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 2.8e-42 176.4 249 41.8
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 3.6e-42 176.0 230 43.5
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 3.6e-42 176.0 257 40.1
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 3.6e-42 176.0 249 41.4
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 4.7e-42 175.6 253 40.7
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 4.7e-42 175.6 261 40.2
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 6.2e-42 175.3 256 40.6
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 6.2e-42 175.3 256 40.6
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 6.2e-42 175.3 256 40.6
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 8.1e-42 174.9 249 41.0
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 8.1e-42 174.9 244 41.4
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 1.1e-41 174.5 257 40.1
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 1.1e-41 174.5 257 40.1
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 1.4e-41 174.1 244 40.6
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 1.4e-41 174.1 242 41.7
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 1.4e-41 174.1 235 42.6
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 1.8e-41 173.7 246 41.5
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 2.3e-41 173.3 244 41.4
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 3.1e-41 172.9 245 41.6
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 4.0e-41 172.6 245 41.2
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 4.0e-41 172.6 244 41.8
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 5.2e-41 172.2 244 41.8
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 5.2e-41 172.2 244 41.0
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 8.9e-41 171.4 264 39.8
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.2e-40 171.0 244 40.2
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 1.5e-40 170.6 257 40.1
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.5e-40 170.6 244 40.6
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 2.0e-40 170.2 264 39.8
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 5.8e-40 168.7 255 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 7.5e-40 168.3 236 41.5
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 9.8e-40 167.9 244 41.0
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 2.2e-39 166.8 256 40.2
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 6.4e-39 165.2 231 41.6
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 1.1e-38 164.5 246 40.7
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 3.2e-38 162.9 262 39.3
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 9.2e-38 161.4 212 43.4
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 1.2e-37 161.0 274 37.6
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.6e-37 160.6 264 38.3
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 3.0e-36 156.4 216 43.5
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 4.3e-35 152.5 203 43.3
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 1.2e-34 151.0 220 40.9
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 8.1e-34 148.3 205 42.0
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.0e-33 146.0 213 42.3
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 2.6e-32 143.3 248 37.5
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 2.9e-31 139.8 203 40.4
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 2.3e-28 130.2 250 34.8
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 8.6e-28 128.3 154 48.1
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 7.3e-27 125.2 143 48.3
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 9.6e-27 124.8 165 44.8
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 4.4e-24 115.9 220 32.7
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-20 102.4 140 42.1
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 6.2e-18 95.5 142 38.0
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 3.0e-12 76.6 82 48.8
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 3.3e-11 73.2 113 41.6
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 4.8e-10 69.3 96 37.5


User provided reference genes

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