Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 0.0e+00 1854.7 1041 100.0
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 3.1e-124 450.7 818 35.1
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 7.9e-120 436.0 812 35.1
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.1e-118 432.2 811 34.0
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 5.7e-118 429.9 893 35.6
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.8e-117 427.6 812 33.9
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 6.3e-117 426.4 812 34.1
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 1.1e-116 425.6 811 34.9
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 2.4e-116 424.5 846 34.9
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 7.0e-116 422.9 814 34.3
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 9.1e-116 422.5 805 33.7
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 2.0e-115 421.4 824 33.7
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 3.5e-115 420.6 812 34.2
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 3.5e-115 420.6 810 34.3
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 3.5e-115 420.6 824 33.7
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 5.9e-115 419.9 805 33.8
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.7e-115 419.5 810 34.1
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.7e-115 419.5 810 34.1
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 1.0e-114 419.1 814 34.2
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.3e-114 418.7 813 34.1
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 3.8e-114 417.2 815 33.1
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 5.0e-114 416.8 802 34.5
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 6.5e-114 416.4 814 33.8
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 8.5e-114 416.0 810 34.1
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 8.5e-114 416.0 811 33.4
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.5e-113 415.2 814 33.8
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 1.9e-113 414.8 819 33.5
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 1.9e-113 414.8 814 33.7
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.9e-113 414.8 814 33.7
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 2.5e-113 414.5 821 33.3
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 2.5e-113 414.5 805 34.0
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 3.2e-113 414.1 814 33.5
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 3.2e-113 414.1 814 33.4
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 4.2e-113 413.7 820 33.5
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 4.2e-113 413.7 814 33.7
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 5.5e-113 413.3 819 33.2
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 5.5e-113 413.3 811 33.4
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 5.5e-113 413.3 814 33.9
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 5.5e-113 413.3 805 33.8
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 5.5e-113 413.3 802 33.8
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 5.5e-113 413.3 814 33.8
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 7.2e-113 412.9 805 34.2
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 7.2e-113 412.9 804 33.7
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 9.4e-113 412.5 805 34.0
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 1.2e-112 412.1 814 33.5
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.2e-112 412.1 814 33.8
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.2e-112 412.1 819 33.1
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 2.1e-112 411.4 804 33.7
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 2.7e-112 411.0 814 33.0
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 3.6e-112 410.6 817 32.6
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 3.6e-112 410.6 816 33.5
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 4.7e-112 410.2 815 33.9
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 4.7e-112 410.2 805 33.2
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.1e-112 409.8 815 33.1
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 6.1e-112 409.8 814 33.3
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 6.1e-112 409.8 827 32.9
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 6.1e-112 409.8 811 32.8
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 8.0e-112 409.5 815 34.0
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 8.0e-112 409.5 818 34.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 1.4e-111 408.7 810 33.2
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.3e-111 407.9 814 32.6
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 4.0e-111 407.1 821 33.0
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 5.2e-111 406.8 814 33.5
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 6.7e-111 406.4 791 33.4
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 8.8e-111 406.0 816 33.6
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 2.6e-110 404.4 814 32.9
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 7.5e-110 402.9 816 33.3
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 7.5e-110 402.9 814 33.0
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 7.5e-110 402.9 814 32.8
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 7.5e-110 402.9 816 33.0
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.7e-109 401.7 815 33.5
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 1.7e-109 401.7 805 33.0
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 2.2e-109 401.4 814 32.7
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 2.8e-109 401.0 805 32.7
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 3.7e-109 400.6 770 32.9
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 4.8e-109 400.2 814 32.8
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 6.3e-109 399.8 815 33.3
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 6.3e-109 399.8 814 32.8
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 6.3e-109 399.8 814 32.8
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 6.3e-109 399.8 814 32.8
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 3.1e-108 397.5 814 32.8
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 3.1e-108 397.5 816 33.2
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 5.3e-108 396.7 814 32.7
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 3.5e-107 394.0 831 32.1
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 4.5e-107 393.7 810 32.7
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 1.1e-105 389.0 810 32.5
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.2e-104 385.6 814 32.6
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.2e-104 385.6 814 32.6
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.1e-104 384.8 721 32.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.1e-104 383.3 805 31.4
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 6.1e-104 383.3 795 33.0
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 8.0e-104 382.9 810 32.8
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 8.0e-104 382.9 805 32.0
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 8.0e-104 382.9 805 32.0
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 1.8e-103 381.7 897 30.5
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 8.8e-103 379.4 796 32.3
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.2e-102 379.0 718 34.1
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-102 378.6 841 32.1
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 4.4e-102 377.1 767 33.2
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 5.7e-102 376.7 820 32.0
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 2.8e-101 374.4 806 32.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 3.1e-100 370.9 826 31.8
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 4.1e-100 370.5 808 32.2
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.0e-99 368.2 809 31.8
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 5.9e-99 366.7 710 33.8
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 4.7e-96 357.1 895 33.1
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.4e-95 355.5 728 34.3
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 1.4e-95 355.5 699 32.8
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 5.7e-94 350.1 805 30.9
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 4.9e-93 347.1 723 32.4
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 1.2e-91 342.4 637 34.4
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.2e-91 342.4 840 30.8
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 4.9e-85 320.5 817 30.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 7.0e-84 316.6 803 30.8
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.2e-84 316.2 795 30.4
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 5.0e-82 310.5 705 30.9
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.2e-80 305.8 820 29.9
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.6e-80 305.4 807 28.6
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 8.9e-79 299.7 807 29.5
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 7.5e-78 296.6 567 34.9
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.4e-76 291.6 764 30.1
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 3.5e-75 287.7 701 30.0
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 6.0e-75 287.0 708 28.8
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 7.5e-70 270.0 709 28.5
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.7e-69 268.9 600 31.7
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.1e-68 266.2 840 26.7
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 6.6e-66 256.9 696 27.2
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 1.8e-63 248.8 353 38.2
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.4e-60 239.2 505 33.1
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 1.9e-60 238.8 487 32.9
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.6e-59 235.7 603 30.3
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 9.6e-57 226.5 817 25.9
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 2.1e-56 225.3 673 28.2
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 8.1e-56 223.4 462 33.3
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.7e-53 215.7 287 41.8
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 4.6e-51 207.6 516 30.6
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.2e-45 188.7 369 33.3
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 5.1e-42 177.6 331 33.8
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 5.1e-42 177.6 235 40.0
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 6.7e-42 177.2 332 33.1
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.5e-38 164.5 321 31.8
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.1e-36 159.8 387 31.5
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 2.5e-33 148.7 816 23.2
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 1.6e-24 119.4 181 38.7
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 1.3e-21 109.8 146 41.8
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 1.7e-21 109.4 166 40.4
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.0e-21 107.8 152 36.2
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 6.5e-21 107.5 111 46.8
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 1.0e-18 100.1 88 58.0
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.2e-14 86.7 110 38.2
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.0e-14 85.9 193 29.0
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 2.3e-10 72.4 232 26.3
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 8.8e-10 70.5 141 32.6
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 7.4e-09 67.4 51 64.7
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 2.8e-08 65.5 136 33.1
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 8.2e-08 63.9 99 36.4
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 2.4e-07 62.4 112 33.9
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 1.2e-06 60.1 65 49.2


User provided reference genes

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