Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g239652 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D004634 1.1e-54 216.5 112 100.0
Pp3c23_5290 Physcomitrium patens HOM05D000113 ORTHO05D004634 2.9e-12 75.5 79 51.9
Mapoly0074s0050 Marchantia polymorpha HOM05D000113 ORTHO05D004634 3.2e-11 72.0 100 46.0
SGA_v2.0_scaffold87G27143 Striga asiatica HOM05D000113 ORTHO05D004634 4.2e-11 71.6 79 48.1
Lsat_1_v5_gn_4_3040 Lactuca sativa HOM05D000113 ORTHO05D004634 9.4e-11 70.5 79 45.6
AagrBONN_evm.TU.Sc2ySwM_228.611 Anthoceros agrestis HOM05D000113 ORTHO05D004634 1.2e-10 70.1 91 49.5
SGA_v2.0_scaffold1G00333 Striga asiatica HOM05D000113 ORTHO05D004634 1.2e-10 70.1 84 50.0
CDE06G1139 Ceratophyllum demersum HOM05D000113 ORTHO05D004634 2.7e-10 68.9 102 46.1
Ca_01274_v3 Cicer arietinum L. HOM05D000113 ORTHO05D004634 3.6e-10 68.6 89 49.4
Peaxi162Scf00128g01138 Petunia axillaris HOM05D000113 ORTHO05D004634 3.6e-10 68.6 100 43.0
Gohir.D13G126800 Gossypium hirsutum HOM05D000113 ORTHO05D004634 6.1e-10 67.8 45 73.3
Gorai.013G141900 Gossypium raimondii HOM05D000113 ORTHO05D004634 6.1e-10 67.8 45 73.3
MCO14G058 Micromonas commoda HOM05D000113 ORTHO05D004634 6.1e-10 67.8 80 55.0
Nn4g22369 Nelumbo nucifera HOM05D000113 ORTHO05D004634 1.0e-09 67.0 45 71.1
Gohir.A13G122700 Gossypium hirsutum HOM05D000113 ORTHO05D004634 1.4e-09 66.6 45 71.1
CAN.G959.46 Capsicum annuum HOM05D000113 ORTHO05D004634 1.8e-09 66.2 100 44.0
MBI01_g09378_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D004634 2.3e-09 65.9 93 44.1
Duzib187G1430 Durio zibethinus HOM05D000113 ORTHO05D004634 3.0e-09 65.5 45 68.9
ECA234G1819 Erigeron canadensis HOM05D000113 ORTHO05D004634 3.0e-09 65.5 79 45.6
Psat0s698g0040 Pisum sativum HOM05D000113 ORTHO05D004634 3.0e-09 65.5 45 71.1
Sabra10G0131700 Salix brachista HOM05D000113 ORTHO05D004634 3.0e-09 65.5 100 41.0
Thecc.07G168000 Theobroma cacao HOM05D000113 ORTHO05D004634 3.0e-09 65.5 45 68.9
CiPaw.05G112500 Carya illinoinensis HOM05D000113 ORTHO05D004634 4.0e-09 65.1 45 68.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 4.0e-09 65.1 45 68.9
CsaV3_7G027360 Cucumis sativus L. HOM05D000113 ORTHO05D004634 4.0e-09 65.1 45 68.9
Oeu019036.1 Olea europaea HOM05D000113 ORTHO05D004634 4.0e-09 65.1 79 46.8
PGSC0003DMG400007192 Solanum tuberosum HOM05D000113 ORTHO05D004634 4.0e-09 65.1 100 43.0
HPP92_020092 Vanilla planifolia HOM05D000113 ORTHO05D004634 4.0e-09 65.1 102 40.2
Solyc10g076910.2 Solanum lycopersicum HOM05D000113 ORTHO05D004634 5.2e-09 64.7 100 43.0
arahy.Tifrunner.gnm1.ann1.FVMK5B Arachis hypogaea HOM05D000113 ORTHO05D004634 6.8e-09 64.3 55 65.5
MSTRG.13314 Avicennia marina HOM05D000113 ORTHO05D004634 6.8e-09 64.3 79 45.6
MELO3C015733.2 Cucumis melo HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 68.9
Dinv27008 Davidia involucrata HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 66.7
PSO017G2450 Papaver somniferum HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 66.7
QL03p054215 Quercus lobata HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 66.7
Rhsim12G0028300 Rhododendron simsii HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 66.7
TWI18G0274 Tripterygium wilfordii HOM05D000113 ORTHO05D004634 6.8e-09 64.3 100 42.0
vmacro01072 Vaccinium macrocarpon HOM05D000113 ORTHO05D004634 6.8e-09 64.3 45 66.7
Aqoxy1G00504 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
Cc09_g10090 Coffea canephora HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
FvH4_4g24000 Fragaria vesca HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
FAN12G3517 Fragaria x ananassa HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
FAN17G0033 Fragaria x ananassa HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
FAN22G0844 Fragaria x ananassa HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
RcHm_v2.0_Chr4g0430661 Rosa chinensis HOM05D000113 ORTHO05D004634 8.8e-09 63.9 45 66.7
Sopen10g028600 Solanum pennellii HOM05D000113 ORTHO05D004634 8.8e-09 63.9 100 43.0
EL10Ac1g00165 Beta vulgaris HOM05D000113 ORTHO05D004634 1.2e-08 63.5 100 46.0
EL10Ac9g21442 Beta vulgaris HOM05D000113 ORTHO05D004634 1.2e-08 63.5 100 46.0
Lj8C80G9 Lonicera japonica HOM05D000113 ORTHO05D004634 1.2e-08 63.5 45 66.7
Medtr3g054400 Medicago truncatula HOM05D000113 ORTHO05D004634 1.2e-08 63.5 79 44.3
SalBow8G3598 Salvia bowleyana HOM05D000113 ORTHO05D004634 1.2e-08 63.5 45 64.4
Aa31LG9G13310 Aethionema arabicum HOM05D000113 ORTHO05D004634 1.5e-08 63.2 79 41.8
MD16G1117100 Malus domestica HOM05D000113 ORTHO05D004634 1.5e-08 63.2 45 64.4
Sed0009802 Sechium edule HOM05D000113 ORTHO05D004634 1.5e-08 63.2 45 66.7
Sc06g0000370 Simmondsia chinensis HOM05D000113 ORTHO05D004634 1.5e-08 63.2 79 44.3
TAR622G0398 Trochodendron aralioides HOM05D000113 ORTHO05D004634 1.5e-08 63.2 45 66.7
CANSAT80G2661 Cannabis sativa HOM05D000113 ORTHO05D004634 2.0e-08 62.8 79 43.0
Glyma.13G342400 Glycine max HOM05D000113 ORTHO05D004634 2.0e-08 62.8 88 44.3
Lalb_Chr14g0372271 Lupinus albus HOM05D000113 ORTHO05D004634 2.0e-08 62.8 88 44.3
Potri.010G172500 Populus trichocarpa HOM05D000113 ORTHO05D004634 2.0e-08 62.8 79 43.0
Zm00001eb105730 Zea mays HOM05D000113 ORTHO05D004634 2.0e-08 62.8 100 41.0
arahy.Tifrunner.gnm1.ann1.XJJ2Y4 Arachis hypogaea HOM05D000113 ORTHO05D004634 2.6e-08 62.4 100 42.0
C02p05850 Brassica napus HOM05D000113 ORTHO05D004634 2.6e-08 62.4 45 64.4
BolC2t06530H Brassica oleracea HOM05D000113 ORTHO05D004634 2.6e-08 62.4 45 64.4
BraA02t05143Z Brassica rapa HOM05D000113 ORTHO05D004634 2.6e-08 62.4 45 64.4
CDE07G1738 Ceratophyllum demersum HOM05D000113 ORTHO05D004634 2.6e-08 62.4 100 42.0
Ciclev10030531m.g Citrus clementina HOM05D000113 ORTHO05D004634 2.6e-08 62.4 88 43.2
Haze_12387 Corylus avellana HOM05D000113 ORTHO05D004634 2.6e-08 62.4 88 42.0
FvH4_3g13400 Fragaria vesca HOM05D000113 ORTHO05D004634 2.6e-08 62.4 79 43.0
FAN11G3859 Fragaria x ananassa HOM05D000113 ORTHO05D004634 2.6e-08 62.4 79 43.0
VMungo1080G1368 Vigna mungo HOM05D000113 ORTHO05D004634 2.6e-08 62.4 88 44.3
arahy.Tifrunner.gnm1.ann1.LX1KXR Arachis hypogaea HOM05D000113 ORTHO05D004634 3.4e-08 62.0 100 42.0
arahy.Tifrunner.gnm1.ann1.LY2VHI Arachis hypogaea HOM05D000113 ORTHO05D004634 3.4e-08 62.0 100 42.0
Migut.E00026 Erythranthe guttata HOM05D000113 ORTHO05D004634 3.4e-08 62.0 79 44.3
DCAR_030388 Daucus carota HOM05D000113 ORTHO05D004634 4.4e-08 61.6 41 68.3
Eucgr.H04653 Eucalyptus grandis HOM05D000113 ORTHO05D004634 4.4e-08 61.6 79 44.3
FAN25G3356 Fragaria x ananassa HOM05D000113 ORTHO05D004634 4.4e-08 61.6 79 43.0
MD10G1223900 Malus domestica HOM05D000113 ORTHO05D004634 4.4e-08 61.6 45 62.2
Actinidia30661 Actinidia chinensis HOM05D000113 ORTHO05D004634 5.7e-08 61.2 45 64.4
ATR0605G003 Amborella trichopoda HOM05D000113 ORTHO05D004634 5.7e-08 61.2 98 39.8
AT5G13010 Arabidopsis thaliana HOM05D000113 ORTHO05D004634 5.7e-08 61.2 88 42.0
Cpa.g.sc701.2 Carica papaya HOM05D000113 ORTHO05D004634 5.7e-08 61.2 40 70.0
Os07g0508000 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D004634 5.7e-08 61.2 100 42.0
Glyma.15G031900 Glycine max HOM05D000113 ORTHO05D004634 7.5e-08 60.8 88 43.2
Medtr2g098440 Medicago truncatula HOM05D000113 ORTHO05D004634 7.5e-08 60.8 79 45.6
PSO478G4217 Papaver somniferum HOM05D000113 ORTHO05D004634 7.5e-08 60.8 45 62.2
Hund14457 Selenicereus undatus HOM05D000113 ORTHO05D004634 7.5e-08 60.8 37 75.7
CSS0001396 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 9.8e-08 60.5 79 41.8
AUR62024132 Chenopodium quinoa HOM05D000113 ORTHO05D004634 9.8e-08 60.5 37 75.7
Phvul.004G165332 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 9.8e-08 60.5 79 44.3
AL6G23600 Arabidopsis lyrata HOM05D000113 ORTHO05D004634 1.3e-07 60.1 41 65.9
RcHm_v2.0_Chr5g0022111 Rosa chinensis HOM05D000113 ORTHO05D004634 1.7e-07 59.7 45 60.0
Thecc.08G194000 Theobroma cacao HOM05D000113 ORTHO05D004634 1.7e-07 59.7 40 70.0
BcaNung01180 Brassica carinata HOM05D000113 ORTHO05D004634 2.2e-07 59.3 45 62.2
Dinv16087 Davidia involucrata HOM05D000113 ORTHO05D004634 2.2e-07 59.3 38 68.4
Sp6g30960 Schrenkiella parvula HOM05D000113 ORTHO05D004634 2.2e-07 59.3 88 43.2
SHI21147 Sapria himalayana HOM05D000113 ORTHO05D004634 2.8e-07 58.9 82 43.9
CBR_g50319 Chara braunii HOM05D000113 ORTHO05D004634 3.7e-07 58.5 41 65.9
Thhalv10012468m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 3.7e-07 58.5 88 42.0
Prupe.1G229100 Prunus persica HOM05D000113 ORTHO05D004634 3.7e-07 58.5 79 41.8
SEGI_14407 Sequoiadendron giganteum HOM05D000113 ORTHO05D004634 3.7e-07 58.5 94 41.5
SEGI_28213 Sequoiadendron giganteum HOM05D000113 ORTHO05D004634 3.7e-07 58.5 94 41.5
Nn4g22365 Nelumbo nucifera HOM05D000113 ORTHO05D004634 4.8e-07 58.2 102 40.2
Manes.16G136600 Manihot esculenta HOM05D000113 ORTHO05D004634 6.3e-07 57.8 37 67.6
Cpa.g.sc369.2 Carica papaya HOM05D000113 ORTHO05D004634 8.3e-07 57.4 55 58.2
Lj6g0023430 Lotus japonicus HOM05D000113 ORTHO05D004634 8.3e-07 57.4 88 40.9
CARHR200450 Cardamine hirsuta HOM05D000113 ORTHO05D004634 1.1e-06 57.0 87 43.7
MD05G1242000 Malus domestica HOM05D000113 ORTHO05D004634 1.4e-06 56.6 45 55.6
QL07p034890 Quercus lobata HOM05D000113 ORTHO05D004634 1.4e-06 56.6 84 40.5
THA.LOC104820521 Tarenaya hassleriana HOM05D000113 ORTHO05D004634 1.8e-06 56.2 94 40.4
Aqoxy7G03775 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 2.4e-06 55.8 59 50.8
A02p01640 Brassica napus HOM05D000113 ORTHO05D004634 2.4e-06 55.8 88 39.8
Carub.0006s1118 Capsella rubella HOM05D000113 ORTHO05D004634 2.4e-06 55.8 88 39.8
Lj3g0026728 Lotus japonicus HOM05D000113 ORTHO05D004634 2.4e-06 55.8 33 78.8
PSO478G4152 Papaver somniferum HOM05D000113 ORTHO05D004634 2.4e-06 55.8 55 54.5
HanXRQChr12g0385401 Helianthus annuus HOM05D000113 ORTHO05D004634 3.1e-06 55.5 34 70.6
Phvul.L011643 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 3.1e-06 55.5 79 43.0
Hund25451 Selenicereus undatus HOM05D000113 ORTHO05D004634 4.1e-06 55.1 64 50.0
DCAR_011488 Daucus carota HOM05D000113 ORTHO05D004634 5.4e-06 54.7 34 70.6
HanXRQChr15g0464301 Helianthus annuus HOM05D000113 ORTHO05D004634 5.4e-06 54.7 97 38.1
Ah.03g136280 Amaranthus hybridus HOM05D000113 ORTHO05D004634 7.0e-06 54.3 31 80.6
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 7.0e-06 54.3 32 71.9
PGR119G0528 Punica granatum HOM05D000113 ORTHO05D004634 9.1e-06 53.9 77 40.3
RcHm_v2.0_Chr4g0431171 Rosa chinensis HOM05D000113 ORTHO05D004634 9.1e-06 53.9 38 63.2
unitig_744.g24419 Utricularia gibba HOM05D000113 ORTHO05D004634 9.1e-06 53.9 34 67.6


User provided reference genes

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