Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 0.0e+00 1904.4 1018 100.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 4.9e-130 469.9 1002 32.8
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 2.8e-125 454.1 1000 32.5
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 1.4e-124 451.8 1014 31.8
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 3.7e-122 443.7 1005 32.1
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 4.1e-121 440.3 1005 31.3
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 5.4e-121 439.9 1006 31.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 7.0e-121 439.5 1004 32.1
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 6.6e-119 433.0 1003 31.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 1.1e-118 432.2 1018 31.3
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 3.3e-118 430.6 1003 31.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 5.6e-118 429.9 1006 31.9
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 7.3e-118 429.5 1007 30.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 7.3e-118 429.5 1001 31.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 9.5e-118 429.1 1006 32.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 1.2e-117 428.7 1007 31.6
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.2e-117 428.7 1011 31.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 1.6e-117 428.3 1006 30.9
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 2.1e-117 427.9 1008 31.2
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-117 427.9 1005 30.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 2.8e-117 427.6 1004 31.8
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 2.8e-117 427.6 1005 31.2
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 6.2e-117 426.4 1007 31.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.4e-116 425.2 1006 31.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 1.8e-116 424.9 1003 31.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 2.3e-116 424.5 1001 31.5
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.0e-116 423.7 1011 31.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 6.8e-116 422.9 1027 30.6
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.4e-115 420.2 1007 30.9
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 5.8e-115 419.9 1017 30.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 9.8e-115 419.1 1005 31.2
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 3.7e-114 417.2 1005 30.3
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 1.1e-113 415.6 1006 31.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-113 415.6 1005 30.5
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 1.9e-113 414.8 1004 31.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 1.9e-113 414.8 1007 30.5
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 4.1e-113 413.7 1004 30.5
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 7.0e-113 412.9 1006 31.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-112 412.1 990 30.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 1.2e-112 412.1 990 30.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 1.2e-112 412.1 990 30.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.6e-112 411.8 1022 30.6
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 2.7e-112 411.0 1007 31.3
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 6.0e-112 409.8 990 31.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 7.8e-112 409.5 1006 31.0
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 1.0e-111 409.1 1011 31.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 1.0e-111 409.1 1006 30.6
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 1.7e-111 408.3 1011 31.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.3e-111 407.9 1016 30.2
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.3e-111 407.9 1009 30.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.3e-111 407.9 1002 31.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 3.9e-111 407.1 1006 30.7
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 3.9e-111 407.1 1006 30.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 5.0e-111 406.8 1010 30.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 5.0e-111 406.8 1007 31.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 5.0e-111 406.8 990 30.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 6.6e-111 406.4 990 30.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 6.6e-111 406.4 990 30.6
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 8.6e-111 406.0 990 30.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.5e-110 405.2 1001 30.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 1.5e-110 405.2 1027 30.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 1.9e-110 404.8 1006 30.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 1.9e-110 404.8 1056 29.9
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.9e-110 404.8 1005 30.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 2.5e-110 404.4 1036 30.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.3e-110 403.7 1016 30.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 7.3e-110 402.9 1011 30.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 9.5e-110 402.5 1000 30.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 9.5e-110 402.5 998 30.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 1.2e-109 402.1 990 30.6
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.6e-109 401.7 990 30.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.6e-109 401.7 1006 31.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 3.6e-109 400.6 959 30.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 4.7e-109 400.2 1006 31.5
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 6.2e-109 399.8 990 30.5
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.1e-108 399.1 1004 31.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 1.1e-108 399.1 1008 30.0
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 2.3e-108 397.9 1002 30.3
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.3e-108 397.9 1000 29.9
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 3.1e-108 397.5 957 31.3
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 4.0e-108 397.1 1008 30.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.5e-107 395.2 1007 29.9
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 2.0e-107 394.8 1007 30.7
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 4.4e-107 393.7 920 32.5
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.4e-105 386.7 989 32.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 1.6e-104 385.2 1005 29.3
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.1e-104 384.8 1044 29.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 7.8e-104 382.9 1065 28.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.3e-103 382.1 1001 30.0
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.7e-103 381.7 1000 29.5
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.6e-103 379.4 1064 30.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 1.2e-101 375.6 1016 29.7
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.1e-101 374.8 1064 29.7
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 8.7e-95 352.8 989 30.1
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 2.2e-90 338.2 885 30.2
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-87 328.9 767 33.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.2e-83 315.8 734 31.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 8.4e-82 309.7 1004 27.6
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.9e-81 308.5 721 32.3
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 1.1e-76 292.7 1001 26.9
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.8e-75 287.0 1009 27.1
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.4e-73 281.6 524 35.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.0e-68 263.1 784 29.5
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.0e-67 261.9 940 26.9
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.1e-65 256.1 997 26.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.2e-64 252.7 768 28.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 8.7e-63 246.5 1023 24.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.7e-58 232.3 1256 23.9
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.2e-57 226.9 527 30.0
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.7e-54 217.2 531 31.8
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.1e-52 213.0 551 31.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 6.5e-50 203.8 463 28.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.0e-43 182.2 410 28.8
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-43 181.4 444 31.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.2e-41 174.9 389 28.8
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 9.4e-41 173.3 428 32.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-40 172.9 732 24.9
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.1e-36 159.8 433 30.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 5.0e-34 151.0 441 32.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.8e-31 142.5 421 27.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-28 132.5 227 36.1
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.0e-26 124.4 322 30.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 6.1e-24 117.5 218 34.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.3e-17 95.1 108 45.4
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-14 85.9 311 22.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-11 75.5 150 27.3
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 5.9e-11 74.3 96 36.5
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-10 72.4 97 37.1
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 5.6e-09 67.8 145 25.5
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-08 65.1 132 36.4
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-08 64.3 133 36.1
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-07 62.8 124 36.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-07 62.0 126 35.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 6.8e-07 60.8 129 37.2
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.6e-06 58.9 87 33.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-06 58.9 87 33.3
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 5.8e-06 57.8 127 35.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-06 57.8 121 34.7


User provided reference genes

Program Settings