Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g073250 Chlamydomonas reinhardtii HOM05D003107 ORTHO05D003092 0.0e+00 2132.5 1374 100.0
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 5.9e-14 84.7 105 49.5
Gohir.A05G010400 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.0e-13 84.0 92 52.2
Gohir.D05G011200 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.0e-13 84.0 92 52.2
FvH4_2g30140 Fragaria vesca HOM05D003107 ORTHO05D003092 1.3e-13 83.6 119 43.7
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.3e-13 83.6 101 48.5
Gohir.D08G257700 Gossypium hirsutum HOM05D003107 ORTHO05D003092 2.3e-13 82.8 96 50.0
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 2.9e-13 82.4 121 43.8
ECA240G4010 Erigeron canadensis HOM05D003107 ORTHO05D003092 2.9e-13 82.4 87 52.9
Phvul.009G097700 Phaseolus vulgaris HOM05D003107 ORTHO05D003092 3.8e-13 82.0 113 46.0
Sed0012229 Sechium edule HOM05D003107 ORTHO05D003092 3.8e-13 82.0 93 52.7
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 3.8e-13 82.0 91 51.6
COL.COLO4_24054 Corchorus olitorius HOM05D003107 ORTHO05D003092 5.0e-13 81.6 104 46.2
Glyma.06G073200 Glycine max HOM05D003107 ORTHO05D003092 5.0e-13 81.6 113 46.0
MD08G1136900 Malus domestica HOM05D003107 ORTHO05D003092 5.0e-13 81.6 123 43.9
unitig_85.g27160 Utricularia gibba HOM05D003107 ORTHO05D003092 5.0e-13 81.6 97 53.6
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 6.6e-13 81.3 97 49.5
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 6.6e-13 81.3 92 52.2
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 6.6e-13 81.3 103 48.5
Gorai.009G011500 Gossypium raimondii HOM05D003107 ORTHO05D003092 6.6e-13 81.3 92 52.2
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 6.6e-13 81.3 123 43.1
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 6.6e-13 81.3 101 49.5
MSTRG.14000 Avicennia marina HOM05D003107 ORTHO05D003092 8.6e-13 80.9 123 43.9
CDE06G1195 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 8.6e-13 80.9 92 52.2
DCAR_023265 Daucus carota HOM05D003107 ORTHO05D003092 8.6e-13 80.9 144 40.3
Duzib187G0318 Durio zibethinus HOM05D003107 ORTHO05D003092 8.6e-13 80.9 92 51.1
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 8.6e-13 80.9 101 49.5
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 1.1e-12 80.5 140 40.7
FAN15G0271 Fragaria x ananassa HOM05D003107 ORTHO05D003092 1.1e-12 80.5 136 41.9
Nitab4.5_0000125g0300 Nicotiana tabacum HOM05D003107 ORTHO05D003092 1.1e-12 80.5 87 52.9
Nitab4.5_0006579g0010 Nicotiana tabacum HOM05D003107 ORTHO05D003092 1.1e-12 80.5 87 51.7
Duzib150G0475 Durio zibethinus HOM05D003107 ORTHO05D003092 1.5e-12 80.1 87 52.9
Gohir.A08G237100 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.5e-12 80.1 202 37.1
Gorai.004G274700 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.5e-12 80.1 202 37.1
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 1.5e-12 80.1 87 52.9
Peaxi162Scf00105g01432 Petunia axillaris HOM05D003107 ORTHO05D003092 1.9e-12 79.7 87 51.7
THA.LOC104815043 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 1.9e-12 79.7 87 52.9
CSS0009859 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 2.5e-12 79.3 92 51.1
CSS0021250 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 2.5e-12 79.3 92 51.1
MELO3C003671.2 Cucumis melo HOM05D003107 ORTHO05D003092 2.5e-12 79.3 87 54.0
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 2.5e-12 79.3 92 50.0
CsaV3_3G046670 Cucumis sativus L. HOM05D003107 ORTHO05D003092 3.3e-12 79.0 87 54.0
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 3.3e-12 79.0 92 51.1
Potri.018G034500 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.3e-12 79.0 92 51.1
Sed0020655 Sechium edule HOM05D003107 ORTHO05D003092 3.3e-12 79.0 94 52.1
Aa31LG3G15760 Aethionema arabicum HOM05D003107 ORTHO05D003092 4.3e-12 78.6 87 51.7
BraA06t26545Z Brassica rapa HOM05D003107 ORTHO05D003092 4.3e-12 78.6 87 51.7
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 4.3e-12 78.6 90 53.3
CDE07G1548 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 4.3e-12 78.6 106 46.2
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 4.3e-12 78.6 95 48.4
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 4.3e-12 78.6 95 48.4
CAN.G21.2 Capsicum annuum HOM05D003107 ORTHO05D003092 5.6e-12 78.2 102 49.0
Migut.A00276 Erythranthe guttata HOM05D003107 ORTHO05D003092 5.6e-12 78.2 101 46.5
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 5.6e-12 78.2 135 45.2
HanXRQChr03g0078061 Helianthus annuus HOM05D003107 ORTHO05D003092 7.2e-12 77.8 87 51.7
Solyc08g067790.4 Solanum lycopersicum HOM05D003107 ORTHO05D003092 7.2e-12 77.8 87 51.7
Sopen08g021720 Solanum pennellii HOM05D003107 ORTHO05D003092 7.2e-12 77.8 87 51.7
PGSC0003DMG400033626 Solanum tuberosum HOM05D003107 ORTHO05D003092 7.2e-12 77.8 87 52.9
TPR.G34688 Trifolium pratense HOM05D003107 ORTHO05D003092 7.2e-12 77.8 93 50.5
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 9.5e-12 77.4 139 40.3
Duzib168G1962 Durio zibethinus HOM05D003107 ORTHO05D003092 9.5e-12 77.4 92 50.0
Lsat_1_v5_gn_1_50961 Lactuca sativa HOM05D003107 ORTHO05D003092 9.5e-12 77.4 121 41.3
Oeu014658.2 Olea europaea HOM05D003107 ORTHO05D003092 9.5e-12 77.4 123 43.1
QL12p031313 Quercus lobata HOM05D003107 ORTHO05D003092 9.5e-12 77.4 122 44.3
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 9.5e-12 77.4 100 46.0
Thecc.09G144400 Theobroma cacao HOM05D003107 ORTHO05D003092 9.5e-12 77.4 106 46.2
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 9.5e-12 77.4 136 41.9
Actinidia15709 Actinidia chinensis HOM05D003107 ORTHO05D003092 1.2e-11 77.0 92 50.0
A06p36230 Brassica napus HOM05D003107 ORTHO05D003092 1.2e-11 77.0 87 50.6
ClCG05G017190 Citrullus lanatus HOM05D003107 ORTHO05D003092 1.2e-11 77.0 87 52.9
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 1.2e-11 77.0 90 51.1
Carub.0006s2338 Capsella rubella HOM05D003107 ORTHO05D003092 1.6e-11 76.6 95 47.4
CARHR115650 Cardamine hirsuta HOM05D003107 ORTHO05D003092 1.6e-11 76.6 91 50.5
CARHR187870 Cardamine hirsuta HOM05D003107 ORTHO05D003092 1.6e-11 76.6 87 50.6
Lalb_Chr11g0063981 Lupinus albus HOM05D003107 ORTHO05D003092 1.6e-11 76.6 95 49.5
Nn2g11838 Nelumbo nucifera HOM05D003107 ORTHO05D003092 2.1e-11 76.3 96 47.9
Sabra18G0035100 Salix brachista HOM05D003107 ORTHO05D003092 2.1e-11 76.3 87 51.7
unitig_578.g16600 Utricularia gibba HOM05D003107 ORTHO05D003092 2.1e-11 76.3 109 45.9
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 2.8e-11 75.9 122 41.8
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 2.8e-11 75.9 87 50.6
AT5G25520 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 2.8e-11 75.9 87 50.6
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 2.8e-11 75.9 89 49.4
C07p42300 Brassica napus HOM05D003107 ORTHO05D003092 2.8e-11 75.9 87 49.4
Medtr3g108010 Medicago truncatula HOM05D003107 ORTHO05D003092 2.8e-11 75.9 88 51.1
AL6G37320 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 3.6e-11 75.5 87 50.6
BolC7t44759H Brassica oleracea HOM05D003107 ORTHO05D003092 3.6e-11 75.5 87 49.4
TAR624G0964 Trochodendron aralioides HOM05D003107 ORTHO05D003092 3.6e-11 75.5 121 41.3
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 3.6e-11 75.5 92 45.7
AT5G11430 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 4.7e-11 75.1 87 48.3
MSTRG.11738 Avicennia marina HOM05D003107 ORTHO05D003092 4.7e-11 75.1 125 40.0
FAN24G3197 Fragaria x ananassa HOM05D003107 ORTHO05D003092 4.7e-11 75.1 173 34.7
Nn8g39282 Nelumbo nucifera HOM05D003107 ORTHO05D003092 4.7e-11 75.1 101 45.5
Prupe.7G018800 Prunus persica HOM05D003107 ORTHO05D003092 4.7e-11 75.1 123 41.5
Ciclev10007403m.g Citrus clementina HOM05D003107 ORTHO05D003092 6.1e-11 74.7 87 49.4
HanXRQChr13g0409611 Helianthus annuus HOM05D003107 ORTHO05D003092 6.1e-11 74.7 87 50.6
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 6.1e-11 74.7 133 41.4
THA.LOC104819888 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 6.1e-11 74.7 128 41.4
AL4G17160 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
BcaC02g08335 Brassica carinata HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
A04p19850 Brassica napus HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
C04p55580 Brassica napus HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
BolC4t27082H Brassica oleracea HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
BraA04t17572Z Brassica rapa HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 49.4
Dinv30213 Davidia involucrata HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 50.6
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 8.0e-11 74.3 87 50.6
SalBow4G2455 Salvia bowleyana HOM05D003107 ORTHO05D003092 8.0e-11 74.3 109 45.9
AL6G22090 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 1.0e-10 73.9 87 47.1
AUR62024841 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.0e-10 73.9 80 53.8
AUR62032378 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.0e-10 73.9 80 53.8
FAN27G2221 Fragaria x ananassa HOM05D003107 ORTHO05D003092 1.0e-10 73.9 190 34.7
Lalb_Chr08g0243801 Lupinus albus HOM05D003107 ORTHO05D003092 1.0e-10 73.9 88 50.0
THA.LOC104799220 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 1.0e-10 73.9 87 49.4
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 1.0e-10 73.9 136 40.4
Thhalv10012648m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 1.4e-10 73.6 87 48.3
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 1.8e-10 73.2 88 48.9
Cc08_g08330 Coffea canephora HOM05D003107 ORTHO05D003092 1.8e-10 73.2 160 37.5
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.8e-10 73.2 87 48.3
EL10Ac2g02541 Beta vulgaris HOM05D003107 ORTHO05D003092 2.3e-10 72.8 80 53.8
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 2.3e-10 72.8 161 35.4
ATR0037G038 Amborella trichopoda HOM05D003107 ORTHO05D003092 3.0e-10 72.4 84 52.4
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 3.0e-10 72.4 87 48.3
BcaB08g37060 Brassica carinata HOM05D003107 ORTHO05D003092 3.0e-10 72.4 87 48.3
BcaC04g19228 Brassica carinata HOM05D003107 ORTHO05D003092 3.0e-10 72.4 117 40.2
A10p26320 Brassica napus HOM05D003107 ORTHO05D003092 3.0e-10 72.4 117 40.2
C09p65430 Brassica napus HOM05D003107 ORTHO05D003092 3.0e-10 72.4 117 40.2
BraA10t44689Z Brassica rapa HOM05D003107 ORTHO05D003092 3.0e-10 72.4 117 40.2
Pp3c9_22950 Physcomitrium patens HOM05D003107 ORTHO05D003092 3.0e-10 72.4 117 40.2
Sp4g05210 Schrenkiella parvula HOM05D003107 ORTHO05D003092 3.0e-10 72.4 87 49.4
Pp3c15_21040 Physcomitrium patens HOM05D003107 ORTHO05D003092 4.0e-10 72.0 92 47.8
CARHR201800 Cardamine hirsuta HOM05D003107 ORTHO05D003092 5.2e-10 71.6 87 47.1
Cpa.g.sc91.11 Carica papaya HOM05D003107 ORTHO05D003092 5.2e-10 71.6 122 40.2
vmacro11116 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 5.2e-10 71.6 87 48.3
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 8.9e-10 70.9 196 35.2
Thhalv10000617m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 8.9e-10 70.9 103 44.7
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 8.9e-10 70.9 87 48.3
CiPaw.07G217900 Carya illinoinensis HOM05D003107 ORTHO05D003092 1.2e-09 70.5 129 42.6
Sc09g0008850 Simmondsia chinensis HOM05D003107 ORTHO05D003092 1.2e-09 70.5 149 39.6
Sp6g32170 Schrenkiella parvula HOM05D003107 ORTHO05D003092 2.6e-09 69.3 146 34.2
FAN20G1668 Fragaria x ananassa HOM05D003107 ORTHO05D003092 4.4e-09 68.6 136 39.0
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 4.4e-09 68.6 135 39.3
PRCOL_00003318 Prasinoderma coloniale HOM05D003107 ORTHO05D003092 5.7e-09 68.2 153 35.9
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 5.7e-09 68.2 140 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 7.5e-09 67.8 165 34.5
SHI18617 Sapria himalayana HOM05D003107 ORTHO05D003092 7.5e-09 67.8 138 39.1
CiPaw.08G015500 Carya illinoinensis HOM05D003107 ORTHO05D003092 1.3e-08 67.0 245 31.0
Mapoly0098s0013 Marchantia polymorpha HOM05D003107 ORTHO05D003092 2.2e-08 66.2 182 33.0
TWI32G0172 Tripterygium wilfordii HOM05D003107 ORTHO05D003092 1.1e-07 63.9 296 30.7
RcHm_v2.0_Chr1g0372471 Rosa chinensis HOM05D002276 ORTHO05D002381 1.4e-07 63.5 138 37.7
Sabra06G0085000 Salix brachista HOM05D002276 ORTHO05D002381 1.8e-07 63.2 129 38.0
Potri.006G109300 Populus trichocarpa HOM05D002276 ORTHO05D002381 3.2e-07 62.4 151 34.4
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 3.2e-07 62.4 256 31.2
QL08p065059 Quercus lobata HOM05D002276 ORTHO05D002381 4.1e-07 62.0 136 36.8
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 5.4e-07 61.6 142 38.0
BcaC02g12009 Brassica carinata HOM05D002276 ORTHO05D002381 5.4e-07 61.6 162 34.6
A05p07490 Brassica napus HOM05D002276 ORTHO05D002381 5.4e-07 61.6 142 38.0
C04p08970 Brassica napus HOM05D002276 ORTHO05D002381 5.4e-07 61.6 162 34.6
BolC4t22486H Brassica oleracea HOM05D002276 ORTHO05D002381 5.4e-07 61.6 162 34.6
Sabra04G0154300 Salix brachista HOM05D002276 ORTHO05D002381 5.4e-07 61.6 151 33.8
BraA05t19714Z Brassica rapa HOM05D002276 ORTHO05D002381 7.0e-07 61.2 154 37.0
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 9.2e-07 60.8 160 36.2
PGSC0003DMG400020602 Solanum tuberosum HOM05D002276 ORTHO05D002381 9.2e-07 60.8 116 37.1
Lalb_Chr11g0067721 Lupinus albus HOM05D002276 ORTHO05D002381 1.2e-06 60.5 149 34.2
Actinidia31634 Actinidia chinensis HOM05D002276 ORTHO05D002381 2.0e-06 59.7 133 35.3
Potri.016G138100 Populus trichocarpa HOM05D002276 ORTHO05D002381 2.0e-06 59.7 151 33.1
Solyc03g095720.3 Solanum lycopersicum HOM05D002276 ORTHO05D002381 2.0e-06 59.7 116 37.1
CiPaw.01G307200 Carya illinoinensis HOM05D002276 ORTHO05D002381 2.7e-06 59.3 121 39.7
FvH4_7g26060 Fragaria vesca HOM05D002276 ORTHO05D002381 2.7e-06 59.3 154 35.7
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 2.7e-06 59.3 158 36.1
SMO200G0185 Selaginella moellendorffii HOM05D003107 ORTHO05D003092 2.7e-06 59.3 57 54.4
Sopen03g025650 Solanum pennellii HOM05D002276 ORTHO05D002381 2.7e-06 59.3 116 37.1
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 3.5e-06 58.9 154 35.1
BcaB01g03676 Brassica carinata HOM05D002276 ORTHO05D002381 3.5e-06 58.9 154 35.7
BcaC01g05530 Brassica carinata HOM05D002276 ORTHO05D002381 4.6e-06 58.5 142 37.3
C03p25250 Brassica napus HOM05D002276 ORTHO05D002381 4.6e-06 58.5 142 37.3
BolC3t14919H Brassica oleracea HOM05D002276 ORTHO05D002381 4.6e-06 58.5 142 37.3
Thhalv10016682m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 4.6e-06 58.5 145 35.2
FAN06G2672 Fragaria x ananassa HOM05D002276 ORTHO05D002381 4.6e-06 58.5 150 35.3
A03p21380 Brassica napus HOM05D002276 ORTHO05D002381 5.9e-06 58.2 158 35.4
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 5.9e-06 58.2 119 35.3
FAN01G0935 Fragaria x ananassa HOM05D002276 ORTHO05D002381 5.9e-06 58.2 154 35.1
BraA03t11373Z Brassica rapa HOM05D002276 ORTHO05D002381 7.8e-06 57.8 158 35.4
Cpa.g.sc736.1 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-06 57.8 110 39.1
Cfa001198 Carpinus fangiana HOM05D002276 ORTHO05D002381 7.8e-06 57.8 123 38.2
CiPaw.02G199100 Carya illinoinensis HOM05D002276 ORTHO05D002381 7.8e-06 57.8 144 36.1
FAN10G0959 Fragaria x ananassa HOM05D002276 ORTHO05D002381 7.8e-06 57.8 154 35.1
FAN10G4373 Fragaria x ananassa HOM05D002276 ORTHO05D002381 7.8e-06 57.8 154 35.1


User provided reference genes

Program Settings